Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 45:19207379d4cf draft

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Uploaded
author fubar
date Thu, 21 Nov 2013 17:48:39 -0500
parents b71da02aa36a
children 0df2b662113e
files htseqsams2mx.xml tool_dependencies.xml
diffstat 2 files changed, 0 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/htseqsams2mx.xml	Thu Nov 21 17:43:35 2013 -0500
+++ b/htseqsams2mx.xml	Thu Nov 21 17:48:39 2013 -0500
@@ -4,9 +4,7 @@
    <regex match=".*" source="both" level="warning" description="chatter from HTSeq:"/>
   </stdio>
   <requirements>
-      <requirement type="package" version="1.7">numpy</requirement>
       <requirement type="package" version="0.7.6">pysam</requirement>
-      <requirement type="package" version="2.4">freetype</requirement>
       <requirement type="package" version="1.2">matplotlib</requirement> 
       <requirement type="package" version="0.5.4p3">htseq</requirement>
   </requirements>
--- a/tool_dependencies.xml	Thu Nov 21 17:43:35 2013 -0500
+++ b/tool_dependencies.xml	Thu Nov 21 17:48:39 2013 -0500
@@ -1,14 +1,8 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="numpy" version="1.7">
-        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="pysam" version="0.7.6">
         <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="freetype" version="2.4">
-        <repository changeset_revision="fe5cfaf931ff" name="package_freetype_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
     <package name="matplotlib" version="1.2">
         <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
     </package>
@@ -18,15 +12,9 @@
                 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <action type="set_environment_for_install">
-                        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                            <package name="numpy" version="1.7" />
-                        </repository>
                         <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="pysam" version="0.7.6" />
                         </repository>
-                        <repository changeset_revision="fe5cfaf931ff" name="package_freetype_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                            <package name="freetype" version="2.4" />
-                        </repository>
                         <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                             <package name="matplotlib" version="1.2" />
                         </repository>