Mercurial > repos > fubar > htseq_bams_to_count_matrix
changeset 48:58fe9656873a draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 21 Nov 2013 18:05:49 -0500 (2013-11-21) |
| parents | edda3a085658 |
| children | c57e63d1a9d2 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Nov 21 17:56:05 2013 -0500 +++ b/tool_dependencies.xml Thu Nov 21 18:05:49 2013 -0500 @@ -9,8 +9,7 @@ <package name="htseq" version="0.5.4p3"> <install version="1.0"> <actions> - <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> - <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> + <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="247e5e5bee87" name="package_pysam_0_7_6" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="pysam" version="0.7.6" /> @@ -19,7 +18,8 @@ <package name="matplotlib" version="1.2.1" /> </repository> </action> - <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> + <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>