Mercurial > repos > fubar > differential_count_models

changeset 3:fe5c828dee80 draft

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Uploaded
author fubar
date Sat, 27 Jul 2013 00:25:33 -0400
parents a612f61ff3b6
children 78aa01cf762d
files rgedgeR/tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/rgedgeR/tool_dependencies.xml	Sat Jul 27 00:18:01 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml	Sat Jul 27 00:25:33 2013 -0400
@@ -22,7 +22,7 @@
                 <action type="shell_command">echo "installme=c('edgeR','limma','DESeq','DESeq2')" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "biocLite()" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "biocLite(installme)" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos="http://cran.us.r-project.org")" &gt;&gt; $INSTALL_DIR/runme.R</action>
+                <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "quit(save='no')" &gt;&gt; $INSTALL_DIR/runme.R</action>                
                 <action type="shell_command"> export PATH=$PATH &amp;&amp; export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD BATCH $INSTALL_DIR/runme.R </action>
             </actions>