# HG changeset patch
# User fubar
# Date 1374899133 14400
# Node ID fe5c828dee808be73eeb343947bcafb7ca2266b8
# Parent  a612f61ff3b6acea9a98ed6046b2a871dea70f4e
Uploaded

diff -r a612f61ff3b6 -r fe5c828dee80 rgedgeR/tool_dependencies.xml
--- a/rgedgeR/tool_dependencies.xml	Sat Jul 27 00:18:01 2013 -0400
+++ b/rgedgeR/tool_dependencies.xml	Sat Jul 27 00:25:33 2013 -0400
@@ -22,7 +22,7 @@
                 <action type="shell_command">echo "installme=c('edgeR','limma','DESeq','DESeq2')" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "biocLite()" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "biocLite(installme)" &gt;&gt; $INSTALL_DIR/runme.R</action>
-                <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos="http://cran.us.r-project.org")" &gt;&gt; $INSTALL_DIR/runme.R</action>
+                <action type="shell_command">echo "install.packages(c('stringr','gplots'),dependencies=T,repos='http://cran.us.r-project.org')" &gt;&gt; $INSTALL_DIR/runme.R</action>
                 <action type="shell_command">echo "quit(save='no')" &gt;&gt; $INSTALL_DIR/runme.R</action>                
                 <action type="shell_command"> export PATH=$PATH &amp;&amp; export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD BATCH $INSTALL_DIR/runme.R </action>
             </actions>