Mercurial > repos > fubar > differential_count_models

changeset 116:b0d21688db8e draft

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Uploaded
author fubar
date Thu, 23 Oct 2014 18:50:38 -0400
parents badcd3b0e708
children a3e9926d8553
files rgedgeRpaired_nocamera.xml tool_dependencies.xml
diffstat 2 files changed, 2 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/rgedgeRpaired_nocamera.xml	Thu Oct 23 01:31:34 2014 -0400
+++ b/rgedgeRpaired_nocamera.xml	Thu Oct 23 18:50:38 2014 -0400
@@ -1,7 +1,6 @@
 <tool id="rgDifferentialCount" name="Differential_Count" version="0.26">
   <description>models using BioConductor packages</description>
   <requirements>
-      <requirement type="package" version="2.9.1">libxml2</requirement>
       <requirement type="package" version="3.1.1">R_3_1_1</requirement>
       <requirement type="package" version="1.3.18">graphicsmagick</requirement>
       <requirement type="package" version="9.10">ghostscript</requirement> <package name="libxml2" version="2.9.1">
--- a/tool_dependencies.xml	Thu Oct 23 01:31:34 2014 -0400
+++ b/tool_dependencies.xml	Thu Oct 23 18:50:38 2014 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R_3_1_1" version="3.1.1">
-        <repository changeset_revision="6ca21e466ef6" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="graphicsmagick" version="1.3.18">
         <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -9,15 +9,12 @@
     <package name="ghostscript" version="9.10">
         <repository changeset_revision="9345d2740f0c" name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="libxml2" version="2.9.1">
-        <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
 
     <package name="biocbasics" version="2.14">
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="6ca21e466ef6" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="d9964efbfbe3" name="package_r_3_1_1" owner="fubar" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R_3_1_1" version="3.1.1" />
                     </repository>                    
                     <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/getopt_1.20.0.tar.gz?raw=true</package>