Mercurial > repos > fcaramia > somatic_sniper

changeset 22:cebac0d02f64 draft

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Uploaded
author fcaramia
date Wed, 19 Jun 2013 22:49:05 -0400
parents 462a6a45fd77
children 1d96132f0bf7
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 19 22:26:39 2013 -0400
+++ b/tool_dependencies.xml	Wed Jun 19 22:49:05 2013 -0400
@@ -20,12 +20,14 @@
 		<action type="shell_command">rm -rf  somatic-sniper-master/build-common/</action>
 		<action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action>		
                 <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ </action>
-                <!--action type="shell_command">make somatic-sniper-master/</action>
-	        <action type="shell_command">mv somatic-sniper-master/bin/bam-somaticsniper $INSTALL_DIR/bin</action>
-               
+                <action type="shell_command">make -C somatic-sniper-master/ </action>
+                <action type="move_directory_files">
+                    <source_directory>somatic-sniper-master/bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action> 
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action-->
+                </action>
             </actions>
         </install>
         <readme>