Mercurial > repos > fcaramia > somatic_sniper
changeset 21:462a6a45fd77 draft
Uploaded
| author | fcaramia |
|---|---|
| date | Wed, 19 Jun 2013 22:26:39 -0400 |
| parents | 6106d7e4c740 |
| children | cebac0d02f64 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 5 insertions(+), 6 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed Jun 19 22:17:33 2013 -0400 +++ b/tool_dependencies.xml Wed Jun 19 22:26:39 2013 -0400 @@ -8,11 +8,10 @@ <action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action> <action type="shell_command">sed -i.bak 's/-lz -L. -lbam/-lbam -lz -L./' Makefile</action> <action type="shell_command">make</action> - <action type="move_file"> - <source>samtools</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin/samtools</destination_directory> + </action> <action type="download_file">https://github.com/genome/somatic-sniper/archive/master.zip</action> <action type="download_file">https://github.com/genome/build-common/tarball/master</action> @@ -20,7 +19,7 @@ <action type="shell_command">tar -xzvf master</action> <action type="shell_command">rm -rf somatic-sniper-master/build-common/</action> <action type="shell_command">mv genome-build-common-077bd57/ somatic-sniper-master/build-common/</action> - <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin somatic-sniper-master/ </action> + <action type="shell_command">cmake -D Samtools_INCLUDE_DIR:PATH=$INSTALL_DIR/bin/samtools somatic-sniper-master/ </action> <!--action type="shell_command">make somatic-sniper-master/</action> <action type="shell_command">mv somatic-sniper-master/bin/bam-somaticsniper $INSTALL_DIR/bin</action>