Mercurial > repos > eugen > bs_seq_test_2

annotate bsmap_fasta.loc.sample @ 3:4abe38e3916e draft

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author eugen
date Thu, 16 Aug 2012 04:13:05 -0400
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1 #This is a sample file distributed with Galaxy that enables BSMAP
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2 #to use a directory of reference FastA sequences data files.The bsmap_fasta.loc
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3 #file has this format (longer white space characters are TAB characters):
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4 #
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5 #<unique_build_id> <dbkey> <display_name> <file_path>
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6 #
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7 #
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8 #Your bsmap_fasta.loc file should include an entry per line for each
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9 reference you have stored. For example:
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10 #
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11 #phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fasta
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12 #hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fasta
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13 #hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fasta
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14 #/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fasta
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15 #...etc...
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16 #