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3
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1 #!/bin/bash
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2
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3 set -ev
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4
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5 # Plain tests
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6 if [[ -z $PLANEMO ]] ; then
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7
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8 sudo sed -i -e '$adeb http://cran.univ-paris1.fr/bin/linux/ubuntu trusty/' /etc/apt/sources.list
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9 sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
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10 sudo apt-get update
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11 sudo apt-get install -y --no-install-recommends r-base
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12 sudo R -e "install.packages(c('batch', 'ade4', 'RUnit'), dependencies = TRUE, repos = 'https://cloud.r-project.org/')"
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13 sudo R -e 'source("http://bioconductor.org/biocLite.R") ; biocLite(c("pcamethods", "ropls"))'
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14 make test
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15
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16 # Planemo tests
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17 else
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18 sudo apt-get update
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19 sudo apt-get install -y python-virtualenv
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20 make planemolint
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21 make planemotest
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22 fi
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