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#!/bin/bash

set -ev

# Plain tests
if [[ -z $PLANEMO ]] ; then

	sudo sed -i -e '$adeb http://cran.univ-paris1.fr/bin/linux/ubuntu trusty/' /etc/apt/sources.list
	sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
	sudo apt-get update
	sudo apt-get install -y --no-install-recommends r-base
	sudo R -e "install.packages(c('batch', 'ade4', 'RUnit'), dependencies = TRUE, repos = 'https://cloud.r-project.org/')"
	sudo R -e 'source("http://bioconductor.org/biocLite.R") ; biocLite(c("pcamethods", "ropls"))'
	make test

# Planemo tests
else
	sudo apt-get update
	sudo apt-get install -y python-virtualenv
	make planemolint
	make planemotest
fi