Mercurial > repos > ethevenot > batchcorrection
diff BC/travis-tests @ 3:2e3a23dd6c24 draft default tip
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author | melpetera |
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date | Thu, 28 Feb 2019 05:12:34 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/BC/travis-tests Thu Feb 28 05:12:34 2019 -0500 @@ -0,0 +1,22 @@ +#!/bin/bash + +set -ev + +# Plain tests +if [[ -z $PLANEMO ]] ; then + + sudo sed -i -e '$adeb http://cran.univ-paris1.fr/bin/linux/ubuntu trusty/' /etc/apt/sources.list + sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 + sudo apt-get update + sudo apt-get install -y --no-install-recommends r-base + sudo R -e "install.packages(c('batch', 'ade4', 'RUnit'), dependencies = TRUE, repos = 'https://cloud.r-project.org/')" + sudo R -e 'source("http://bioconductor.org/biocLite.R") ; biocLite(c("pcamethods", "ropls"))' + make test + +# Planemo tests +else + sudo apt-get update + sudo apt-get install -y python-virtualenv + make planemolint + make planemotest +fi