Mercurial > repos > estrain > srst2v2
changeset 2:e372e42148de draft
planemo upload
| author | estrain |
|---|---|
| date | Sat, 02 Dec 2017 13:52:16 -0500 |
| parents | 16c9fccf550d |
| children | a98ed567ea48 |
| files | srst2v2.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/srst2v2.xml Sat Dec 02 13:42:43 2017 -0500 +++ b/srst2v2.xml Sat Dec 02 13:52:16 2017 -0500 @@ -94,8 +94,8 @@ <param type="data" name="mlst_definitions" label="ST definitions for MLST scheme" format="tabular" /> <param type="text" name="mlstdelim" value="_" format="txt" label="Character(s) separating gene name from allele number in MLST database (default '_')" /> <param type="integer" name="mlst_max_mismatch" value="10" format="txt" label="Maximum number of mismatches per read (default 10)" /> - <param type="float" name="profile_max_mismatch" value="3" format="txt" label="Mean mismatches for reporting profile" /> - <param type="float" name="profile_cov" value="90" format="txt" label="Mean % Coverage for reporting profile)" /> + <param type="float" name="profile_max_mismatch" value="1" format="txt" label="Mean mismatches for reporting profile" /> + <param type="float" name="profile_cov" value="98" format="txt" label="Mean % Coverage for reporting profile)" /> </when> <when value="gene"> @@ -131,9 +131,9 @@ </inputs> <outputs> - <data format="txt" label="Allele Scores" name="scores" from_work_dir="*.scores"/> - <data format="txt" label="Profile Scores" name="pscores" from_work_dir="*.pscores"/> - <data format="txt" label="Predicted Alleles" name="alleles" from_work_dir="*results.txt"/> + <data format="tabular" type="text" label="Allele Scores" name="scores" from_work_dir="*.scores"/> + <data format="tabular" type="text" label="Profile Scores" name="pscores" from_work_dir="*.pscores"/> + <data format="tabular" type="text" label="Predicted Alleles" name="alleles" from_work_dir="*results.txt"/> </outputs> <help><![CDATA[