# HG changeset patch
# User estrain
# Date 1512240736 18000
# Node ID e372e42148deea629bca9af64fa258ed39950a31
# Parent  16c9fccf550d12d0c40b633e2be2287ca50e3d44
planemo upload

diff -r 16c9fccf550d -r e372e42148de srst2v2.xml
--- a/srst2v2.xml	Sat Dec 02 13:42:43 2017 -0500
+++ b/srst2v2.xml	Sat Dec 02 13:52:16 2017 -0500
@@ -94,8 +94,8 @@
           <param type="data" name="mlst_definitions" label="ST definitions for MLST scheme" format="tabular" />
           <param type="text" name="mlstdelim" value="_" format="txt" label="Character(s) separating gene name from allele number in MLST database (default &apos;_&apos;)" />
           <param type="integer" name="mlst_max_mismatch" value="10" format="txt" label="Maximum number of mismatches per read (default 10)" />
-          <param type="float" name="profile_max_mismatch" value="3" format="txt" label="Mean mismatches for reporting profile" />
-          <param type="float" name="profile_cov" value="90" format="txt" label="Mean % Coverage for reporting profile)" />
+          <param type="float" name="profile_max_mismatch" value="1" format="txt" label="Mean mismatches for reporting profile" />
+          <param type="float" name="profile_cov" value="98" format="txt" label="Mean % Coverage for reporting profile)" />
    
         </when>
         <when value="gene">
@@ -131,9 +131,9 @@
     </inputs>
 
     <outputs>
-      <data format="txt" label="Allele Scores" name="scores" from_work_dir="*.scores"/>
-      <data format="txt" label="Profile Scores" name="pscores" from_work_dir="*.pscores"/>
-      <data format="txt" label="Predicted Alleles" name="alleles" from_work_dir="*results.txt"/>
+      <data format="tabular" type="text" label="Allele Scores" name="scores" from_work_dir="*.scores"/>
+      <data format="tabular" type="text" label="Profile Scores" name="pscores" from_work_dir="*.pscores"/>
+      <data format="tabular" type="text" label="Predicted Alleles" name="alleles" from_work_dir="*results.txt"/>
     </outputs>
 
     <help><![CDATA[