Mercurial > repos > estrain > fastani_db
changeset 11:da7cafa2b1ea draft default tip
Uploaded
| author | estrain |
|---|---|
| date | Mon, 30 May 2022 19:15:43 +0000 |
| parents | 103084cb9f63 |
| children | |
| files | fastani_db/fastani.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/fastani_db/fastani.xml Mon May 30 18:55:00 2022 +0000 +++ b/fastani_db/fastani.xml Mon May 30 19:15:43 2022 +0000 @@ -18,15 +18,15 @@ ### COMMAND ### - fastANI --ql query.lst --rl ref.lst -o output -t "\${GALAXY_SLOTS:-1}"; + fastANI --ql query.lst --rl ref.lst -o output -t "\${GALAXY_SLOTS:-1}" && ### FILTER OUTPUT ### #if $filter.select=="top" - cp output output.tmp && head -n 1 output.tmp > output; + cp output output.tmp && head -n 1 output.tmp > output #else if $filter.select=="per" - awk '{ if($3>$filter.percut) {print $1,"\t",$2,"\t",$3,"\t",$4,"\t",$5;}}' output > output.tmp; mv output.tmp output; + awk '{ if($3>$filter.percut) {print $1,"\t",$2,"\t",$3,"\t",$4,"\t",$5;}}' output > output.tmp && mv output.tmp output #end if - + ; ]]></command> <inputs> <param name="query" type="data" format="fasta" label="Query Sequence"