# HG changeset patch
# User estrain
# Date 1653938143 0
# Node ID da7cafa2b1eacf7ffd6fa7cc21222ce4c3a53228
# Parent  103084cb9f638f9f5f6dfc04d44031bac979b973
Uploaded

diff -r 103084cb9f63 -r da7cafa2b1ea fastani_db/fastani.xml
--- a/fastani_db/fastani.xml	Mon May 30 18:55:00 2022 +0000
+++ b/fastani_db/fastani.xml	Mon May 30 19:15:43 2022 +0000
@@ -18,15 +18,15 @@
 
     ### COMMAND ###
 
-    fastANI --ql query.lst --rl ref.lst -o output -t "\${GALAXY_SLOTS:-1}"; 
+    fastANI --ql query.lst --rl ref.lst -o output -t "\${GALAXY_SLOTS:-1}" && 
 
     ### FILTER OUTPUT ###
     #if $filter.select=="top"
-      cp output output.tmp && head -n 1 output.tmp > output;
+      cp output output.tmp && head -n 1 output.tmp > output
     #else if $filter.select=="per"
-      awk '{ if($3>$filter.percut) {print $1,"\t",$2,"\t",$3,"\t",$4,"\t",$5;}}' output > output.tmp; mv output.tmp output; 
+      awk '{ if($3>$filter.percut) {print $1,"\t",$2,"\t",$3,"\t",$4,"\t",$5;}}' output > output.tmp && mv output.tmp output
     #end if 
-
+    ; 
     ]]></command>
     <inputs>
         <param name="query" type="data" format="fasta" label="Query Sequence"