|
0
|
1 <tool id="ganon_data_manager" name="ganon data manager" version="0.0.1" tool_type="manage_data">
|
|
7
|
2 <description>Create entry for ganon databases</description>
|
|
0
|
3 <requirements>
|
|
|
4 <requirement type="package">ganon</requirement>
|
|
5
|
5 <requirement type="package" version="3.7">python</requirement>
|
|
0
|
6 </requirements>
|
|
|
7 <command detect_errors="exit_code"><![CDATA[
|
|
7
|
8 python $__tool_directory__/add_table.py --rrna $rrna --output_directory $out_dir;
|
|
0
|
9 ]]></command>
|
|
|
10 <inputs>
|
|
4
|
11 <param argument="rrna" type="select" label="Bacterial rRNA loci">
|
|
0
|
12 <option value="5S">5S</option>
|
|
|
13 <option value="16S">16S</option>
|
|
|
14 <option value="23S">23S</option>
|
|
|
15 </param>
|
|
|
16 <param argument="out_dir" type="text" label="Output folder" value="/tool-data/ganon"/>
|
|
|
17 </inputs>
|
|
|
18 <outputs>
|
|
|
19 <data name="output_file" format="data_manager_json"/>
|
|
|
20 </outputs>
|
|
|
21 <help><![CDATA[
|
|
7
|
22 Create entry for ganon databases in data table
|
|
0
|
23 ]]>
|
|
|
24 </help>
|
|
|
25 <citations>
|
|
|
26 </citations>
|
|
|
27 </tool>
|
