Mercurial > repos > estrain > data_manager_ganon
view data_manager/ganon_data_manager.xml @ 6:0ff53edee33d draft
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author | estrain |
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date | Fri, 05 Jul 2019 08:45:19 -0400 |
parents | 4661be69d0a3 |
children | 936dfddbcd74 |
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<tool id="ganon_data_manager" name="ganon data manager" version="0.0.1" tool_type="manage_data"> <description>Create ganon databases</description> <requirements> <requirement type="package">ganon</requirement> <requirement type="package" version="3.7">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python $__tool_directory__/fetch_ganon.py --rrna $rrna --output_directory $out_dir; python --version; ganon build -d $rrna -i *.gz; mv $rrna.* $out_dir; ]]></command> <inputs> <param argument="rrna" type="select" label="Bacterial rRNA loci"> <option value="5S">5S</option> <option value="16S">16S</option> <option value="23S">23S</option> </param> <param argument="out_dir" type="text" label="Output folder" value="/tool-data/ganon"/> </inputs> <outputs> <data name="output_file" format="data_manager_json"/> </outputs> <help><![CDATA[ Retrieve RefSeq Bacterial rRNA Targeted Loci and build ganon database ]]> </help> <citations> </citations> </tool>