Mercurial > repos > estrain > data_manager_fastani

changeset 21:7fb415930708 draft

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Uploaded
author estrain
date Thu, 21 Jul 2022 12:39:04 +0000
parents 1af0cdf9b1fa
children eb3008f7a8a2
files data_manager_fastani/data_manager/data_manager_fastani.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_fastani/data_manager/data_manager_fastani.xml	Wed Jul 20 21:54:50 2022 +0000
+++ b/data_manager_fastani/data_manager/data_manager_fastani.xml	Thu Jul 21 12:39:04 2022 +0000
@@ -2,13 +2,14 @@
     <requirements>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        python $__tool_directory__/data_manager_fastani.py --type $input_source_selector --name $name --acc ../accessions.csv --out ${output_file};
+        python $__tool_directory__/data_manager_fastani.py --type $input_source_selector --name $name --acc $accs --out ${output_file};
     ]]></command>
     <inputs>
         <param name="input_source_selector" type="select" label="Database Selection">
           <option value="D1">FastANI D1</option>
           <option value="VL">FastANI D1 + VetLIRN Fish Pathogens</option>
         </param>
+	<param name="accs" type="text" label="Accession CSV file" default="../tool-data/accessions.csv">
         <param name="name" type="text" format="text" label="Database Name"/> 
     </inputs>
     <outputs>