# HG changeset patch
# User estrain
# Date 1658407144 0
# Node ID 7fb41593070876182e0df934cf36f1d2abe8b6fe
# Parent  1af0cdf9b1fa24b78f7bc29922d58f6ac8b4d746
Uploaded

diff -r 1af0cdf9b1fa -r 7fb415930708 data_manager_fastani/data_manager/data_manager_fastani.xml
--- a/data_manager_fastani/data_manager/data_manager_fastani.xml	Wed Jul 20 21:54:50 2022 +0000
+++ b/data_manager_fastani/data_manager/data_manager_fastani.xml	Thu Jul 21 12:39:04 2022 +0000
@@ -2,13 +2,14 @@
     <requirements>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        python $__tool_directory__/data_manager_fastani.py --type $input_source_selector --name $name --acc ../accessions.csv --out ${output_file};
+        python $__tool_directory__/data_manager_fastani.py --type $input_source_selector --name $name --acc $accs --out ${output_file};
     ]]></command>
     <inputs>
         <param name="input_source_selector" type="select" label="Database Selection">
           <option value="D1">FastANI D1</option>
           <option value="VL">FastANI D1 + VetLIRN Fish Pathogens</option>
         </param>
+	<param name="accs" type="text" label="Accession CSV file" default="../tool-data/accessions.csv">
         <param name="name" type="text" format="text" label="Database Name"/> 
     </inputs>
     <outputs>