Mercurial > repos > estrain > data_manager_amrfinderplus_database_builder

changeset 20:5a4fb81b6177 draft

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Uploaded
author estrain
date Tue, 08 Mar 2022 18:25:57 +0000
parents 6a31cdb029df
children 9d869fa8e47e
files data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 18:13:23 2022 +0000
+++ b/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 18:25:57 2022 +0000
@@ -5,7 +5,7 @@
         <requirement type="package">hmmer</requirement>
     </requirements>
     <command><![CDATA[
-        python $__tool_directory__/data_manager_amrfinderplus_database_builder.py --path $amrdbpath --name $amrdbname --value $amrdbvalue;
+        python $__tool_directory__/data_manager_amrfinderplus_database_builder.py --path $amrdbpath --name $amrdbname --value $amrdbvalue --out ${out_file};
     ]]></command>
     <inputs>
       <param name="amrdbpath" type="text" label="Absolute path of new amrFinderPlus database folder"/>
@@ -13,7 +13,7 @@
       <param name="amrdbvalue" type="text" label="Value of amrFinderPlus database"/>
     </inputs>
     <outputs>
-        <data name="out_file_amr" format="data_manager_json"/>
+        <data name="out_file" format="data_manager_json"/>
     </outputs>
     <tests>
         <test>