# HG changeset patch
# User estrain
# Date 1646763957 0
# Node ID 5a4fb81b617763282b964570c75a49aec1f89c9b
# Parent  6a31cdb029df92e9fbca6c74775d31170c715ba3
Uploaded

diff -r 6a31cdb029df -r 5a4fb81b6177 data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml
--- a/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 18:13:23 2022 +0000
+++ b/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.xml	Tue Mar 08 18:25:57 2022 +0000
@@ -5,7 +5,7 @@
         <requirement type="package">hmmer</requirement>
     </requirements>
     <command><![CDATA[
-        python $__tool_directory__/data_manager_amrfinderplus_database_builder.py --path $amrdbpath --name $amrdbname --value $amrdbvalue;
+        python $__tool_directory__/data_manager_amrfinderplus_database_builder.py --path $amrdbpath --name $amrdbname --value $amrdbvalue --out ${out_file};
     ]]></command>
     <inputs>
       <param name="amrdbpath" type="text" label="Absolute path of new amrFinderPlus database folder"/>
@@ -13,7 +13,7 @@
       <param name="amrdbvalue" type="text" label="Value of amrFinderPlus database"/>
     </inputs>
     <outputs>
-        <data name="out_file_amr" format="data_manager_json"/>
+        <data name="out_file" format="data_manager_json"/>
     </outputs>
     <tests>
         <test>