Mercurial > repos > estrain > data_manager_amrfinderplus

changeset 19:c5d56f2f6e07 draft

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Uploaded
author estrain
date Sun, 22 May 2022 21:49:34 +0000
parents 5c70175af270
children 54a1ba82521d
files data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py data_manager_amrfinderplus/data_manager_conf.xml data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test
diffstat 4 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py	Sun May 22 19:53:11 2022 +0000
+++ b/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py	Sun May 22 21:49:34 2022 +0000
@@ -64,7 +64,7 @@
 
     data_table_entry = {
       'data_tables' : {
-        'amrfinder_databases': [
+        'amrfinderplus': [
           {
             "value":version,
             "name":argsname,
--- a/data_manager_amrfinderplus/data_manager_conf.xml	Sun May 22 19:53:11 2022 +0000
+++ b/data_manager_amrfinderplus/data_manager_conf.xml	Sun May 22 21:49:34 2022 +0000
@@ -1,16 +1,16 @@
 <?xml version="1.0"?>
 <data_managers>
     <data_manager tool_file="data_manager/data_manager_amrfinderplus.xml" id="data_manager_amrfinderplus">
-      <data_table name="amrfinder_databases">
+      <data_table name="amrfinderplus">
         <output>
           <column name="value" />
           <column name="name" />
           <column name="path" output_ref="output_file" >
             <move type="directory" relativize_symlinks="True">
               <src>${path}</src>
-              <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">amrfinderDB/</target>
+              <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">amrfinderplus/</target>
             </move>
-            <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/amrfinderDB/#echo str($value)#</value_translation>
+            <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/amrfinderplus/#echo str($value)#</value_translation>
             <value_translation type="function">abspath</value_translation>
           </column>
         </output>
--- a/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample	Sun May 22 19:53:11 2022 +0000
+++ b/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample	Sun May 22 21:49:34 2022 +0000
@@ -1,6 +1,6 @@
 <tables>
-    <table name="amrfinder_databases" comment_char="#" allow_duplicate_entries="False">
+    <table name="amrfinderplus" comment_char="#" allow_duplicate_entries="False">
         <columns>value, name, path</columns>
-        <file path="tool-data/amrfinder_databases.loc" />
+        <file path="tool-data/amrfinderplus.loc" />
     </table>
 </tables>
--- a/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test	Sun May 22 19:53:11 2022 +0000
+++ b/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test	Sun May 22 21:49:34 2022 +0000
@@ -1,6 +1,6 @@
 <tables>
-    <table name="amrfinder_databases" comment_char="#" allow_duplicate_entries="False">
+    <table name="amrfinderplus" comment_char="#" allow_duplicate_entries="False">
         <columns>value,name, path</columns>
-        <file path="${__HERE__}/test-data/amrfinder_databases.loc" />
+        <file path="${__HERE__}/test-data/amrfinderplus.loc" />
     </table>
 </tables>