Mercurial > repos > estrain > data_manager_amrfinderplus
changeset 18:5c70175af270 draft
Uploaded
| author | estrain |
|---|---|
| date | Sun, 22 May 2022 19:53:11 +0000 |
| parents | 7788277f2b2c |
| children | c5d56f2f6e07 |
| files | data_manager_amrfinderplus/test-data/amrfinder_databases.loc data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test |
| diffstat | 3 files changed, 12 insertions(+), 12 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_amrfinderplus/test-data/amrfinder_databases.loc Sun May 22 19:53:11 2022 +0000 @@ -0,0 +1,7 @@ +# this is a tab separated file describing the location of amrfinder databases used for the +# +# the columns are: +# value name path +# +# for example +# 2021-04-14 May22DB /tmp/tool-data/amrfinderdatabases/May22DB
--- a/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample Sun May 22 19:46:02 2022 +0000 +++ b/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample Sun May 22 19:53:11 2022 +0000 @@ -1,12 +1,6 @@ <tables> - <!-- Locations of all fasta files required to build Diamond databases --> - <table name="diamond_database" comment_char="#"> - <columns>value, name, db_path</columns> - <file path="tool-data/diamond_database.loc" /> - </table> - <!-- Locations of taxonomy data downloaded from NCBI --> - <table name="ncbi_accession2taxid" comment_char="#"> + <table name="amrfinder_databases" comment_char="#" allow_duplicate_entries="False"> <columns>value, name, path</columns> - <file path="tool-data/ncbi_accession2taxid.loc" /> + <file path="tool-data/amrfinder_databases.loc" /> </table> </tables>
--- a/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test Sun May 22 19:46:02 2022 +0000 +++ b/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test Sun May 22 19:53:11 2022 +0000 @@ -1,7 +1,6 @@ <tables> - <!-- Locations of fasta files to build amrfinderplus databases --> - <table name="amrfinderplus_databases" comment_char="#"> - <columns>value, name, db_path</columns> - <file path="${__HERE__}/test-data/amrfinderplus_database.loc" /> + <table name="amrfinder_databases" comment_char="#" allow_duplicate_entries="False"> + <columns>value,name, path</columns> + <file path="${__HERE__}/test-data/amrfinder_databases.loc" /> </table> </tables>