# HG changeset patch
# User estrain
# Date 1653249191 0
# Node ID 5c70175af270a10892429ca470392c81057ab8f3
# Parent  7788277f2b2c95ad70522a0f17be251f7a72a855
Uploaded

diff -r 7788277f2b2c -r 5c70175af270 data_manager_amrfinderplus/test-data/amrfinder_databases.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_amrfinderplus/test-data/amrfinder_databases.loc	Sun May 22 19:53:11 2022 +0000
@@ -0,0 +1,7 @@
+# this is a tab separated file describing the location of amrfinder databases used for the
+#
+# the columns are:
+# value name path
+#
+# for example
+# 2021-04-14 May22DB /tmp/tool-data/amrfinderdatabases/May22DB
diff -r 7788277f2b2c -r 5c70175af270 data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample
--- a/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample	Sun May 22 19:46:02 2022 +0000
+++ b/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.sample	Sun May 22 19:53:11 2022 +0000
@@ -1,12 +1,6 @@
 <tables>
-    <!-- Locations of all fasta files required to build Diamond databases -->
-    <table name="diamond_database" comment_char="#">
-        <columns>value, name, db_path</columns>
-        <file path="tool-data/diamond_database.loc" />
-    </table>
-    <!-- Locations of taxonomy data downloaded from NCBI -->
-    <table name="ncbi_accession2taxid" comment_char="#">
+    <table name="amrfinder_databases" comment_char="#" allow_duplicate_entries="False">
         <columns>value, name, path</columns>
-        <file path="tool-data/ncbi_accession2taxid.loc" />
+        <file path="tool-data/amrfinder_databases.loc" />
     </table>
 </tables>
diff -r 7788277f2b2c -r 5c70175af270 data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test
--- a/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test	Sun May 22 19:46:02 2022 +0000
+++ b/data_manager_amrfinderplus/tool_data_table_conf_sample.xml.test	Sun May 22 19:53:11 2022 +0000
@@ -1,7 +1,6 @@
 <tables>
-    <!-- Locations of fasta files to build amrfinderplus databases -->
-    <table name="amrfinderplus_databases" comment_char="#">
-        <columns>value, name, db_path</columns>
-        <file path="${__HERE__}/test-data/amrfinderplus_database.loc" />
+    <table name="amrfinder_databases" comment_char="#" allow_duplicate_entries="False">
+        <columns>value,name, path</columns>
+        <file path="${__HERE__}/test-data/amrfinder_databases.loc" />
     </table>
 </tables>