Mercurial > repos > elixir-it > covacs_variant_recalibrator

changeset 1:afcf3ae6dc62 draft

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Uploaded
author elixir-it
date Fri, 09 Nov 2018 06:28:54 -0500
parents 3d969c748317
children 6863011209c4
files mv_untar_gatk.sh
diffstat 1 files changed, 0 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/mv_untar_gatk.sh	Fri Nov 09 06:04:05 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-#!/bin/bash
-#if the .jar file is not present in the conda_prefix the script search the tar.gz in the conda_prefix of the vm
-#and untar the archive
-if [[ ! -f $CONDA_PREFIX/../../GenomeAnalysisTK.jar ]] ; then
-	tar -zxvf $CONDA_PREFIX/../../GenomeAnalysis*.tar.gz -C $CONDA_PREFIX/../../ 
-	
-else
-	echo GATK is present
-fi