Mercurial > repos > elixir-it > covacs_variant_recalibrator
changeset 2:6863011209c4 draft
Uploaded
| author | elixir-it |
|---|---|
| date | Fri, 09 Nov 2018 06:51:10 -0500 |
| parents | afcf3ae6dc62 |
| children | 733c164f2759 |
| files | tool-data/covacs_vcf.loc.sample |
| diffstat | 1 files changed, 0 insertions(+), 29 deletions(-) [+] |
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--- a/tool-data/covacs_vcf.loc.sample Fri Nov 09 06:28:54 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory vcf file for covacs sequences data files. You will need -#to create these data files and then create a vcf_loc.loc file -#similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The vcf_loc.loc -#file has this format (longer white space characters are TAB characters): -# -#<unique_id> <display_name> <file_path> -# -#So, for example, if you had vcf file stored in -#/export/resource/, -#then the covacs_vcf.loc entry would look like this: -# -#hapmap hapmap /export/resource/hapmap.vcf -# -#and your /export/resource directory -#would contain hapmap.vcf. -# -# -#Your covacs_vcf.loc file should include an entry per line for each -#index set you have stored. The "file" in the path does not actually -#exist, but it is the prefix for the actual index files. -#Note that for backwards compatibility with workflows, the unique ID of -#an entry must be the path that was in the original loc file, because that -#is the value stored in the workflow for that parameter. -# -hapmap hapmap /export/resources/hapmap.vcf -1000G 1000G /export/resources/1000G.vcf -