# HG changeset patch
# User elixir-it
# Date 1541762934 18000
# Node ID afcf3ae6dc627d786ef4d51ab407142056687005
# Parent  3d969c748317f5454ce68dd507024a78dc71b413
Uploaded

diff -r 3d969c748317 -r afcf3ae6dc62 mv_untar_gatk.sh
--- a/mv_untar_gatk.sh	Fri Nov 09 06:04:05 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-#!/bin/bash
-#if the .jar file is not present in the conda_prefix the script search the tar.gz in the conda_prefix of the vm
-#and untar the archive
-if [[ ! -f $CONDA_PREFIX/../../GenomeAnalysisTK.jar ]] ; then
-	tar -zxvf $CONDA_PREFIX/../../GenomeAnalysis*.tar.gz -C $CONDA_PREFIX/../../ 
-	
-else
-	echo GATK is present
-fi