Mercurial > repos > elixir-it > corgat_nucmer_snp
changeset 2:4f557e248e9d draft default tip
Uploaded
author | elixir-it |
---|---|
date | Fri, 30 Oct 2020 13:26:04 +0000 |
parents | 33def392143b |
children | |
files | nucmer_snp/nucmer_snps.xml |
diffstat | 1 files changed, 0 insertions(+), 1 deletions(-) [+] |
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--- a/nucmer_snp/nucmer_snps.xml Tue Oct 27 14:44:51 2020 +0000 +++ b/nucmer_snp/nucmer_snps.xml Fri Oct 30 13:26:04 2020 +0000 @@ -27,7 +27,6 @@ **What it does** This simple wrapper is used to align a SARS-CoV-2 genome assembly to the reference genome as available from Genbank (NC_045512). - A copy of the genome, is also found on this Galaxy server under Shared Data -> Data Libraries -> SARS-CoV-2-REF. This wrapper run nucmer with default parameters to align genomes. Variants are extracted from the nucmer delta file by the show-snps utility. Output files obtained from this software should be concatenated with the join_nucmer utility before functional annotation.