# HG changeset patch # User elixir-it # Date 1604064364 0 # Node ID 4f557e248e9de6e49d3853ed3a08c0d4711a30d5 # Parent 33def392143b1d1bc4aeb64a7384ea9a9d5b753f Uploaded diff -r 33def392143b -r 4f557e248e9d nucmer_snp/nucmer_snps.xml --- a/nucmer_snp/nucmer_snps.xml Tue Oct 27 14:44:51 2020 +0000 +++ b/nucmer_snp/nucmer_snps.xml Fri Oct 30 13:26:04 2020 +0000 @@ -27,7 +27,6 @@ **What it does** This simple wrapper is used to align a SARS-CoV-2 genome assembly to the reference genome as available from Genbank (NC_045512). - A copy of the genome, is also found on this Galaxy server under Shared Data -> Data Libraries -> SARS-CoV-2-REF. This wrapper run nucmer with default parameters to align genomes. Variants are extracted from the nucmer delta file by the show-snps utility. Output files obtained from this software should be concatenated with the join_nucmer utility before functional annotation.