Mercurial > repos > eduardo > mergegffs
changeset 7:665e050b95de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mergegffs commit 351b38d6d44042f2e52bde185b9e2f9f61048289-dirty
| author | eduardo |
|---|---|
| date | Sat, 08 Apr 2017 15:25:43 -0400 |
| parents | 77c005f344df |
| children | 072ab1b781d8 |
| files | mergegffs.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/mergegffs.xml Fri Apr 07 18:39:37 2017 -0400 +++ b/mergegffs.xml Sat Apr 08 15:25:43 2017 -0400 @@ -47,7 +47,7 @@ <param name="hmmscan" type="data" format="txt" optional="true" label="HMMER hmmscan: Peptides vs PFAM" help="[optional] HMMER hmmscan output: Table of per-domain hits. Output format: Table of per-domain hits (--domtblout)" /> <param name="tmhmm" type="data" format="tabular" optional="true" label="TMHMM on Peptides" help="[optional]"/> <param name="signalp" type="data" format="tabular" optional="true" label="SignalP on Peptides" help="[optional]" /> - + <!-- <conditional name="cond_modify"> <param name="select_existing" type="select" label="Use an existing gffutils db from history"> <option value="yes" selected="True">Yes</option> @@ -58,7 +58,7 @@ </when> <when value="no" /> </conditional> - + --> <section name="filter_option" title="Filter options" expanded="False"> <param argument="-E" type="float" value="1e-5" label="Maximum E-value for reporting best blast hit and associated annotations." /> @@ -81,7 +81,7 @@ <param name="tmhmm" ftype="tabular" value="tmhmm.out" /> <param name="signalp" ftype="tabular" value="signalp.out" /> <param name="keep_sqlite" value="false" /> - <output name="output" ftype="tabular" file="output.gff" /> + <output name="output" file="output.gff" /> </test> </tests>
--- a/tool_dependencies.xml Fri Apr 07 18:39:37 2017 -0400 +++ b/tool_dependencies.xml Sat Apr 08 15:25:43 2017 -0400 @@ -7,6 +7,6 @@ <repository changeset_revision="3ba40e33a4f3" name="package_genomegtftools_1_0" owner="eduardo" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="biopython" version="1.66"> -7 <repository changeset_revision="d86f7eb34488" name="package_biopython_1_66" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> -8 </package> + <repository changeset_revision="d86f7eb34488" name="package_biopython_1_66" owner="biopython" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> </tool_dependency>