# HG changeset patch
# User eduardo
# Date 1491679543 14400
# Node ID 665e050b95de15cdf923632e885ae5ba865db68e
# Parent  77c005f344df60ae79a6c2b990dc04748cd134e4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mergegffs commit 351b38d6d44042f2e52bde185b9e2f9f61048289-dirty

diff -r 77c005f344df -r 665e050b95de mergegffs.xml
--- a/mergegffs.xml	Fri Apr 07 18:39:37 2017 -0400
+++ b/mergegffs.xml	Sat Apr 08 15:25:43 2017 -0400
@@ -47,7 +47,7 @@
         <param name="hmmscan" type="data" format="txt" optional="true" label="HMMER hmmscan: Peptides vs PFAM" help="[optional] HMMER hmmscan output: Table of per-domain hits. Output format: Table of per-domain hits (--domtblout)" />
         <param name="tmhmm" type="data" format="tabular" optional="true" label="TMHMM on Peptides" help="[optional]"/>
         <param name="signalp" type="data" format="tabular" optional="true" label="SignalP on Peptides" help="[optional]" />
-
+        <!--
         <conditional name="cond_modify">
             <param name="select_existing" type="select" label="Use an existing gffutils db from history">
                 <option value="yes" selected="True">Yes</option>
@@ -58,7 +58,7 @@
             </when>
             <when value="no" />
         </conditional>
-
+      -->
         <section name="filter_option" title="Filter options" expanded="False">
             <param argument="-E" type="float" value="1e-5" label="Maximum E-value for reporting best blast hit and associated annotations." />
 
@@ -81,7 +81,7 @@
             <param name="tmhmm" ftype="tabular" value="tmhmm.out" />
             <param name="signalp" ftype="tabular" value="signalp.out" />
             <param name="keep_sqlite" value="false" />
-            <output name="output" ftype="tabular" file="output.gff" />
+            <output name="output" file="output.gff" />
         </test>
 
     </tests>
diff -r 77c005f344df -r 665e050b95de tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Apr 07 18:39:37 2017 -0400
+++ b/tool_dependencies.xml	Sat Apr 08 15:25:43 2017 -0400
@@ -7,6 +7,6 @@
     <repository changeset_revision="3ba40e33a4f3" name="package_genomegtftools_1_0" owner="eduardo" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="biopython" version="1.66">
-7	    <repository changeset_revision="d86f7eb34488" name="package_biopython_1_66" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-8	  </package>
+    <repository changeset_revision="d86f7eb34488" name="package_biopython_1_66" owner="biopython" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  	</package>
    </tool_dependency>