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278
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280 <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="/users/set_protocol?protocol_selector=http&protocol_type=clone" class="inline-form js-clone-selector-form " data-form-nonce="4ba686ed5228c3eb03400d23254c4d20bc3b66b1" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="JAKVn/If9WDLhdIjJGp0COQLDdP0FtIOOeWxeTPEJa9kkBcLe6/9d193Qtc3fx+s7RDiYfgNqUTPTAhO+q/GIQ==" /></div><button class="btn-link js-clone-selector" data-protocol="http" type="submit">HTTPS</button></form> or <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="/users/set_protocol?protocol_selector=subversion&protocol_type=clone" class="inline-form js-clone-selector-form " data-form-nonce="4ba686ed5228c3eb03400d23254c4d20bc3b66b1" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="9CPqvsue7OFfyvEiEyMH2MniX8cjLMrDNlHlaqhfUwMi6ImJFy/4TLgCYicTu5OMI9QRpIX5wH+ENJIOWoaBow==" /></div><button class="btn-link js-clone-selector" data-protocol="subversion" type="submit">Subversion</button></form>.
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281 <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you.">
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282 <span class="octicon octicon-question"></span>
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283 </a>
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284 </div>
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285
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286 <a href="/galaxyproject/tools-devteam/archive/master.zip"
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287 class="btn btn-sm sidebar-button"
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288 aria-label="Download the contents of galaxyproject/tools-devteam as a zip file"
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289 title="Download the contents of galaxyproject/tools-devteam as a zip file"
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290 rel="nofollow">
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291 <span class="octicon octicon-cloud-download"></span>
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292 Download ZIP
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293 </a>
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294 </div>
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302 <span class="btn btn-sm select-menu-button js-menu-target css-truncate" data-hotkey="w"
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303 data-ref="master"
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304 title="master"
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305 role="button" aria-label="Switch branches or tags" tabindex="0" aria-haspopup="true">
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306 <i>Branch:</i>
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307 <span class="js-select-button css-truncate-target">master</span>
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308 </span>
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314 <span class="select-menu-title">Switch branches/tags</span>
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315 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
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316 </div>
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319 <div class="select-menu-text-filter">
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320 <input type="text" aria-label="Filter branches/tags" id="context-commitish-filter-field" class="js-filterable-field js-navigation-enable" placeholder="Filter branches/tags">
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321 </div>
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322 <div class="select-menu-tabs">
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323 <ul>
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324 <li class="select-menu-tab">
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325 <a href="#" data-tab-filter="branches" data-filter-placeholder="Filter branches/tags" class="js-select-menu-tab" role="tab">Branches</a>
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326 </li>
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327 <li class="select-menu-tab">
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328 <a href="#" data-tab-filter="tags" data-filter-placeholder="Find a tag…" class="js-select-menu-tab" role="tab">Tags</a>
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329 </li>
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330 </ul>
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331 </div>
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332 </div>
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334 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="branches" role="menu">
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335
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336 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">
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339 <a class="select-menu-item js-navigation-item js-navigation-open "
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340 href="/galaxyproject/tools-devteam/tree/bamtools/tools/bowtie2/tool-data"
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341 data-name="bamtools"
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342 data-skip-pjax="true"
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343 rel="nofollow">
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344 <span class="select-menu-item-icon octicon octicon-check"></span>
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345 <span class="select-menu-item-text css-truncate-target" title="bamtools">
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346 bamtools
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347 </span>
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348 </a>
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349 <a class="select-menu-item js-navigation-item js-navigation-open "
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350 href="/galaxyproject/tools-devteam/tree/blankenberg-dm-samtools-fix-1/tools/bowtie2/tool-data"
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351 data-name="blankenberg-dm-samtools-fix-1"
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352 data-skip-pjax="true"
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353 rel="nofollow">
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354 <span class="select-menu-item-icon octicon octicon-check"></span>
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355 <span class="select-menu-item-text css-truncate-target" title="blankenberg-dm-samtools-fix-1">
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356 blankenberg-dm-samtools-fix-1
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357 </span>
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358 </a>
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359 <a class="select-menu-item js-navigation-item js-navigation-open "
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360 href="/galaxyproject/tools-devteam/tree/hisat/tools/bowtie2/tool-data"
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361 data-name="hisat"
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362 data-skip-pjax="true"
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363 rel="nofollow">
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364 <span class="select-menu-item-icon octicon octicon-check"></span>
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365 <span class="select-menu-item-text css-truncate-target" title="hisat">
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366 hisat
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367 </span>
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368 </a>
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369 <a class="select-menu-item js-navigation-item js-navigation-open "
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370 href="/galaxyproject/tools-devteam/tree/libgd-export/tools/bowtie2/tool-data"
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371 data-name="libgd-export"
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372 data-skip-pjax="true"
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373 rel="nofollow">
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374 <span class="select-menu-item-icon octicon octicon-check"></span>
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375 <span class="select-menu-item-text css-truncate-target" title="libgd-export">
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376 libgd-export
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377 </span>
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378 </a>
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379 <a class="select-menu-item js-navigation-item js-navigation-open selected"
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380 href="/galaxyproject/tools-devteam/tree/master/tools/bowtie2/tool-data"
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381 data-name="master"
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382 data-skip-pjax="true"
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383 rel="nofollow">
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384 <span class="select-menu-item-icon octicon octicon-check"></span>
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385 <span class="select-menu-item-text css-truncate-target" title="master">
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386 master
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387 </span>
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388 </a>
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389 <a class="select-menu-item js-navigation-item js-navigation-open "
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390 href="/galaxyproject/tools-devteam/tree/origin/hisat/tools/bowtie2/tool-data"
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391 data-name="origin/hisat"
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392 data-skip-pjax="true"
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393 rel="nofollow">
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394 <span class="select-menu-item-icon octicon octicon-check"></span>
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395 <span class="select-menu-item-text css-truncate-target" title="origin/hisat">
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396 origin/hisat
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397 </span>
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398 </a>
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399 <a class="select-menu-item js-navigation-item js-navigation-open "
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400 href="/galaxyproject/tools-devteam/tree/osx_compat/tools/bowtie2/tool-data"
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401 data-name="osx_compat"
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405 <span class="select-menu-item-text css-truncate-target" title="osx_compat">
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406 osx_compat
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407 </span>
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408 </a>
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409 <a class="select-menu-item js-navigation-item js-navigation-open "
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410 href="/galaxyproject/tools-devteam/tree/picard_sortsam/tools/bowtie2/tool-data"
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411 data-name="picard_sortsam"
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412 data-skip-pjax="true"
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413 rel="nofollow">
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414 <span class="select-menu-item-icon octicon octicon-check"></span>
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415 <span class="select-menu-item-text css-truncate-target" title="picard_sortsam">
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416 picard_sortsam
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417 </span>
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418 </a>
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419 </div>
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420
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421 <div class="select-menu-no-results">Nothing to show</div>
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423
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424 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="tags">
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425 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">
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426
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427
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428 </div>
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429
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430 <div class="select-menu-no-results">Nothing to show</div>
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431 </div>
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433 </div>
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434 </div>
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435 </div>
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436
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437 <div class="btn-group right">
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438 <a href="/galaxyproject/tools-devteam/find/master" data-pjax data-hotkey="t" class="js-show-file-finder btn btn-sm empty-icon tooltipped tooltipped-s" aria-label="Quickly jump between files">
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439 <span class="octicon octicon-list-unordered"></span>
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440 </a>
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441 <a href="/galaxyproject/tools-devteam/commits/master/tools/bowtie2/tool-data" class="btn btn-sm empty-icon tooltipped tooltipped-s" aria-label="Browse commits for this branch">
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442 <span class="octicon octicon-history"></span>
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443 </a>
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444 </div>
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445 <div class="breadcrumb">
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446 <span class="repo-root js-repo-root"><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/galaxyproject/tools-devteam" class="" data-branch="master" data-pjax="true" itemscope="url"><span itemprop="title">tools-devteam</span></a></span></span><span class="separator">/</span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/galaxyproject/tools-devteam/tree/master/tools" class="" data-branch="master" data-pjax="true" itemscope="url"><span itemprop="title">tools</span></a></span><span class="separator">/</span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/galaxyproject/tools-devteam/tree/master/tools/bowtie2" class="" data-branch="master" data-pjax="true" itemscope="url"><span itemprop="title">bowtie2</span></a></span><span class="separator">/</span><strong class="final-path">tool-data</strong><span class="separator">/</span>
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447 <a class="btn-link disabled tooltipped tooltipped-e" href="#" aria-label="You must be signed in to make or propose changes">
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448 <span class="octicon octicon-plus"></span>
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449 </a>
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450
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451 </div>
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452 </div>
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457 <div class="commit commit-tease js-details-container" >
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458 <p class="commit-title ">
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459 <a href="/galaxyproject/tools-devteam/commit/0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" class="message" data-pjax="true" title="Imported from capsule None">Imported from capsule None</a>
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460
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461 </p>
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462 <div class="commit-meta">
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463 <button aria-label="Copy SHA" class="js-zeroclipboard zeroclipboard-link tooltipped tooltipped-s" data-clipboard-text="0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
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464 <a href="/galaxyproject/tools-devteam/commit/0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" class="sha-block" data-pjax>latest commit <span class="sha">0e90a8ae97</span></a>
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465
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466 <div class="authorship">
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467 <img alt="" class="avatar" height="20" src="https://0.gravatar.com/avatar/ad921d60486366258809553a3db49a4a?d=https%3A%2F%2Fassets-cdn.github.com%2Fimages%2Fgravatars%2Fgravatar-user-420.png&r=x&s=140" width="20" />
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468 <span class="author-name"><span>devteam</span></span>
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469 authored <time class="updated" datetime="2014-01-27T14:25:15Z" is="relative-time">Jan 27, 2014</time>
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470
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471 </div>
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472 </div>
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473 </div>
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474
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475
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476 <div class="file-wrap">
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477 <a href="/galaxyproject/tools-devteam/tree/1090680aa5b5320f652f2b8d1ba09012ec64f31b/tools/bowtie2/tool-data" class="hidden js-permalink-shortcut" data-hotkey="y">Permalink</a>
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478
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479 <table class="files" data-pjax>
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480 <tr class="up-tree">
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481 <td></td>
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482 <td><a href="/galaxyproject/tools-devteam/tree/master/tools/bowtie2" rel="nofollow" title="Go to parent directory">..</a></td>
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483 <td></td>
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484 <td></td>
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485 </tr>
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488 <tbody>
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489 <tr class="warning include-fragment-error">
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490 <td class="icon"><span class="octicon octicon-alert"></span></td>
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491 <td class="content" colspan="3">Failed to load latest commit information.</td>
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492 </tr>
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498 </td>
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499 <td class="content">
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500 <span class="css-truncate css-truncate-target"><a href="/galaxyproject/tools-devteam/blob/master/tools/bowtie2/tool-data/bowtie2_indices.loc.sample" class="js-directory-link" id="c40bdb39046837f90eee47b2d4102b4c-df0421721cb0a940077863f2a4c43ce90f15f378" title="bowtie2_indices.loc.sample">bowtie2_indices.loc.sample</a></span>
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501 </td>
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502 <td class="message">
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503 <span class="css-truncate css-truncate-target">
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504 <a href="/galaxyproject/tools-devteam/commit/0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" class="message" data-pjax="true" title="Imported from capsule None">Imported from capsule None</a>
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505 </span>
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506 </td>
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507 <td class="age">
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508 <span class="css-truncate css-truncate-target"><time datetime="2014-01-27T14:25:15Z" is="time-ago">Jan 27, 2014</time></span>
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509 </td>
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510 </tr>
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511 </tbody>
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512 </table>
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513
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523 </div>
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524 </div>
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525
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526
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527 </div><!-- /.wrapper -->
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528
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529 <div class="container">
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530 <div class="site-footer" role="contentinfo">
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531 <ul class="site-footer-links right">
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532 <li><a href="https://status.github.com/" data-ga-click="Footer, go to status, text:status">Status</a></li>
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536 <li><a href="https://github.com/blog" data-ga-click="Footer, go to blog, text:blog">Blog</a></li>
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537 <li><a href="https://github.com/about" data-ga-click="Footer, go to about, text:about">About</a></li>
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538 <li><a href="https://help.github.com" data-ga-click="Footer, go to help, text:help">Help</a></li>
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539
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540 </ul>
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541
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542 <a href="https://github.com" aria-label="Homepage">
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543 <span class="mega-octicon octicon-mark-github" title="GitHub"></span>
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544 </a>
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545 <ul class="site-footer-links">
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546 <li>© 2015 <span title="0.03530s from github-fe128-cp1-prd.iad.github.net">GitHub</span>, Inc.</li>
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547 <li><a href="https://github.com/site/terms" data-ga-click="Footer, go to terms, text:terms">Terms</a></li>
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551 </ul>
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552 </div>
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553 </div>
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554
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555
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556 <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay">
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557 <div class="fullscreen-container js-suggester-container">
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558 <div class="textarea-wrap">
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559 <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents" placeholder="" aria-label=""></textarea>
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560 <div class="suggester-container">
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561 <div class="suggester fullscreen-suggester js-suggester js-navigation-container"></div>
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562 </div>
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563 </div>
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564 </div>
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565 <div class="fullscreen-sidebar">
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566 <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode">
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567 <span class="mega-octicon octicon-screen-normal"></span>
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568 </a>
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569 <a href="#" class="theme-switcher js-theme-switcher tooltipped tooltipped-w"
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570 aria-label="Switch themes">
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571 <span class="octicon octicon-color-mode"></span>
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572 </a>
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573 </div>
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574 </div>
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575
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576
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577
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578
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579
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580
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581 <div id="ajax-error-message" class="flash flash-error">
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582 <span class="octicon octicon-alert"></span>
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583 <a href="#" class="octicon octicon-x flash-close js-ajax-error-dismiss" aria-label="Dismiss error"></a>
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584 Something went wrong with that request. Please try again.
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585 </div>
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586
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587
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588 <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/frameworks-0485840b01bfad89b36a26560c41c81e89e86a52c7780751cbb38abe578740e3.js"></script>
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589 <script async="async" crossorigin="anonymous" src="https://assets-cdn.github.com/assets/github/index-0d2574c6492d258b1f72c17ff869c4bfd4599af14b76e035e5799a9009c861c1.js"></script>
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590
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591
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592 </body>
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593 </html>
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594
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