view tool-data @ 4:e301861bc979

Uploaded
author eduardo
date Fri, 31 Jul 2015 12:20:09 -0400
parents
children
line wrap: on
line source




<!DOCTYPE html>
<html lang="en" class="">
  <head prefix="og: http://ogp.me/ns# fb: http://ogp.me/ns/fb# object: http://ogp.me/ns/object# article: http://ogp.me/ns/article# profile: http://ogp.me/ns/profile#">
    <meta charset='utf-8'>
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
    <meta http-equiv="Content-Language" content="en">
    <meta name="viewport" content="width=1020">
    
    
    <title>tools-devteam/tools/bowtie2/tool-data at master · galaxyproject/tools-devteam · GitHub</title>
    <link rel="search" type="application/opensearchdescription+xml" href="/opensearch.xml" title="GitHub">
    <link rel="fluid-icon" href="https://github.com/fluidicon.png" title="GitHub">
    <link rel="apple-touch-icon" sizes="57x57" href="/apple-touch-icon-114.png">
    <link rel="apple-touch-icon" sizes="114x114" href="/apple-touch-icon-114.png">
    <link rel="apple-touch-icon" sizes="72x72" href="/apple-touch-icon-144.png">
    <link rel="apple-touch-icon" sizes="144x144" href="/apple-touch-icon-144.png">
    <meta property="fb:app_id" content="1401488693436528">

      <meta content="@github" name="twitter:site" /><meta content="summary" name="twitter:card" /><meta content="galaxyproject/tools-devteam" name="twitter:title" /><meta content="tools-devteam - Contains a set of Galaxy Tools mostly written by the Galaxy Team." name="twitter:description" /><meta content="https://avatars2.githubusercontent.com/u/7937847?v=3&amp;s=400" name="twitter:image:src" />
      <meta content="GitHub" property="og:site_name" /><meta content="object" property="og:type" /><meta content="https://avatars2.githubusercontent.com/u/7937847?v=3&amp;s=400" property="og:image" /><meta content="galaxyproject/tools-devteam" property="og:title" /><meta content="https://github.com/galaxyproject/tools-devteam" property="og:url" /><meta content="tools-devteam - Contains a set of Galaxy Tools mostly written by the Galaxy Team." property="og:description" />
      <meta name="browser-stats-url" content="https://api.github.com/_private/browser/stats">
    <meta name="browser-errors-url" content="https://api.github.com/_private/browser/errors">
    <link rel="assets" href="https://assets-cdn.github.com/">
    
    <meta name="pjax-timeout" content="1000">
    

    <meta name="msapplication-TileImage" content="/windows-tile.png">
    <meta name="msapplication-TileColor" content="#ffffff">
    <meta name="selected-link" value="repo_source" data-pjax-transient>

        <meta name="google-analytics" content="UA-3769691-2">

    <meta content="collector.githubapp.com" name="octolytics-host" /><meta content="collector-cdn.github.com" name="octolytics-script-host" /><meta content="github" name="octolytics-app-id" /><meta content="8076FA05:65B2:E5FEC0:55BBA039" name="octolytics-dimension-request_id" />
    
    <meta content="Rails, view, files#disambiguate" data-pjax-transient="true" name="analytics-event" />
    <meta class="js-ga-set" name="dimension1" content="Logged Out">
      <meta class="js-ga-set" name="dimension4" content="Current repo nav">
    <meta name="is-dotcom" content="true">
        <meta name="hostname" content="github.com">
    <meta name="user-login" content="">

      <link rel="icon" sizes="any" mask href="https://assets-cdn.github.com/pinned-octocat.svg">
      <meta name="theme-color" content="#4078c0">
      <link rel="icon" type="image/x-icon" href="https://assets-cdn.github.com/favicon.ico">

    <!-- </textarea> --><!-- '"` --><meta content="authenticity_token" name="csrf-param" />
<meta content="GOpCQWiHFgns9myreSCK7+N02IV9g/J+ODH1JuqVDnDfaupN4K9TrGuHCG1lRXHAUXv3Vmv0ODIpciNdA3Y6+w==" name="csrf-token" />
    

    <link crossorigin="anonymous" href="https://assets-cdn.github.com/assets/github/index-c7126cd67871e693a9f863b7a0e99879ca39079b15a8784f8b543c03bf14ad72.css" media="all" rel="stylesheet" />
    <link crossorigin="anonymous" href="https://assets-cdn.github.com/assets/github2/index-842a108e3a4a5a53562a0fe173962e417105c1fb8bbb60d8df44a6adb0b91841.css" media="all" rel="stylesheet" />
    
    


    <meta http-equiv="x-pjax-version" content="cd1c5b3a52f2b80f8a06cf03a5a87e30">

      
  <meta name="description" content="tools-devteam - Contains a set of Galaxy Tools mostly written by the Galaxy Team.">
  <meta name="go-import" content="github.com/galaxyproject/tools-devteam git https://github.com/galaxyproject/tools-devteam.git">

  <meta content="7937847" name="octolytics-dimension-user_id" /><meta content="galaxyproject" name="octolytics-dimension-user_login" /><meta content="24609401" name="octolytics-dimension-repository_id" /><meta content="galaxyproject/tools-devteam" name="octolytics-dimension-repository_nwo" /><meta content="true" name="octolytics-dimension-repository_public" /><meta content="false" name="octolytics-dimension-repository_is_fork" /><meta content="24609401" name="octolytics-dimension-repository_network_root_id" /><meta content="galaxyproject/tools-devteam" name="octolytics-dimension-repository_network_root_nwo" />
  <link href="https://github.com/galaxyproject/tools-devteam/commits/master.atom" rel="alternate" title="Recent Commits to tools-devteam:master" type="application/atom+xml">

  </head>


  <body class="logged_out  env-production  vis-public">
    <a href="#start-of-content" tabindex="1" class="accessibility-aid js-skip-to-content">Skip to content</a>
    <div class="wrapper">
      
      
      



        
        <div class="header header-logged-out" role="banner">
  <div class="container clearfix">

    <a class="header-logo-wordmark" href="https://github.com/" data-ga-click="(Logged out) Header, go to homepage, icon:logo-wordmark">
      <span class="mega-octicon octicon-logo-github"></span>
    </a>

    <div class="header-actions" role="navigation">
        <a class="btn btn-primary" href="/join" data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up">Sign up</a>
      <a class="btn" href="/login?return_to=%2Fgalaxyproject%2Ftools-devteam%2Ftree%2Fmaster%2Ftools%2Fbowtie2%2Ftool-data" data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in">Sign in</a>
    </div>

    <div class="site-search repo-scope js-site-search" role="search">
      <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="/galaxyproject/tools-devteam/search" class="js-site-search-form" data-global-search-url="/search" data-repo-search-url="/galaxyproject/tools-devteam/search" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /></div>
  <label class="js-chromeless-input-container form-control">
    <div class="scope-badge">This repository</div>
    <input type="text"
      class="js-site-search-focus js-site-search-field is-clearable chromeless-input"
      data-hotkey="s"
      name="q"
      placeholder="Search"
      aria-label="Search this repository"
      data-global-scope-placeholder="Search GitHub"
      data-repo-scope-placeholder="Search"
      tabindex="1"
      autocapitalize="off">
  </label>
</form>
    </div>

      <ul class="header-nav left" role="navigation">
          <li class="header-nav-item">
            <a class="header-nav-link" href="/explore" data-ga-click="(Logged out) Header, go to explore, text:explore">Explore</a>
          </li>
          <li class="header-nav-item">
            <a class="header-nav-link" href="/features" data-ga-click="(Logged out) Header, go to features, text:features">Features</a>
          </li>
          <li class="header-nav-item">
            <a class="header-nav-link" href="https://enterprise.github.com/" data-ga-click="(Logged out) Header, go to enterprise, text:enterprise">Enterprise</a>
          </li>
          <li class="header-nav-item">
            <a class="header-nav-link" href="/blog" data-ga-click="(Logged out) Header, go to blog, text:blog">Blog</a>
          </li>
      </ul>

  </div>
</div>



      <div id="start-of-content" class="accessibility-aid"></div>
          <div class="site" itemscope itemtype="http://schema.org/WebPage">
    <div id="js-flash-container">
      
    </div>
    <div class="pagehead repohead instapaper_ignore readability-menu ">
      <div class="container">

        <div class="clearfix">
          
<ul class="pagehead-actions">

  <li>
      <a href="/login?return_to=%2Fgalaxyproject%2Ftools-devteam"
    class="btn btn-sm btn-with-count tooltipped tooltipped-n"
    aria-label="You must be signed in to watch a repository" rel="nofollow">
    <span class="octicon octicon-eye"></span>
    Watch
  </a>
  <a class="social-count" href="/galaxyproject/tools-devteam/watchers">
    25
  </a>

  </li>

  <li>
      <a href="/login?return_to=%2Fgalaxyproject%2Ftools-devteam"
    class="btn btn-sm btn-with-count tooltipped tooltipped-n"
    aria-label="You must be signed in to star a repository" rel="nofollow">
    <span class="octicon octicon-star"></span>
    Star
  </a>

    <a class="social-count js-social-count" href="/galaxyproject/tools-devteam/stargazers">
      19
    </a>

  </li>

    <li>
      <a href="/login?return_to=%2Fgalaxyproject%2Ftools-devteam"
        class="btn btn-sm btn-with-count tooltipped tooltipped-n"
        aria-label="You must be signed in to fork a repository" rel="nofollow">
        <span class="octicon octicon-repo-forked"></span>
        Fork
      </a>
      <a href="/galaxyproject/tools-devteam/network" class="social-count">
        32
      </a>
    </li>
</ul>

          <h1 itemscope itemtype="http://data-vocabulary.org/Breadcrumb" class="entry-title public">
            <span class="mega-octicon octicon-repo"></span>
            <span class="author"><a href="/galaxyproject" class="url fn" itemprop="url" rel="author"><span itemprop="title">galaxyproject</span></a></span><!--
         --><span class="path-divider">/</span><!--
         --><strong><a href="/galaxyproject/tools-devteam" data-pjax="#js-repo-pjax-container">tools-devteam</a></strong>

            <span class="page-context-loader">
              <img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
            </span>

          </h1>
        </div>

      </div>
    </div>

      <div class="container">
        <div class="repository-with-sidebar repo-container new-discussion-timeline ">
          <div class="repository-sidebar clearfix">
              

<nav class="sunken-menu repo-nav js-repo-nav js-sidenav-container-pjax js-octicon-loaders"
     role="navigation"
     data-pjax="#js-repo-pjax-container"
     data-issue-count-url="/galaxyproject/tools-devteam/issues/counts">
  <ul class="sunken-menu-group">
    <li class="tooltipped tooltipped-w" aria-label="Code">
      <a href="/galaxyproject/tools-devteam" aria-label="Code" aria-selected="true" class="js-selected-navigation-item selected sunken-menu-item" data-hotkey="g c" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches /galaxyproject/tools-devteam">
        <span class="octicon octicon-code"></span> <span class="full-word">Code</span>
        <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
</a>    </li>

      <li class="tooltipped tooltipped-w" aria-label="Issues">
        <a href="/galaxyproject/tools-devteam/issues" aria-label="Issues" class="js-selected-navigation-item sunken-menu-item" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /galaxyproject/tools-devteam/issues">
          <span class="octicon octicon-issue-opened"></span> <span class="full-word">Issues</span>
          <span class="js-issue-replace-counter"></span>
          <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
</a>      </li>

    <li class="tooltipped tooltipped-w" aria-label="Pull requests">
      <a href="/galaxyproject/tools-devteam/pulls" aria-label="Pull requests" class="js-selected-navigation-item sunken-menu-item" data-hotkey="g p" data-selected-links="repo_pulls /galaxyproject/tools-devteam/pulls">
          <span class="octicon octicon-git-pull-request"></span> <span class="full-word">Pull requests</span>
          <span class="js-pull-replace-counter"></span>
          <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
</a>    </li>

  </ul>
  <div class="sunken-menu-separator"></div>
  <ul class="sunken-menu-group">

    <li class="tooltipped tooltipped-w" aria-label="Pulse">
      <a href="/galaxyproject/tools-devteam/pulse" aria-label="Pulse" class="js-selected-navigation-item sunken-menu-item" data-selected-links="pulse /galaxyproject/tools-devteam/pulse">
        <span class="octicon octicon-pulse"></span> <span class="full-word">Pulse</span>
        <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
</a>    </li>

    <li class="tooltipped tooltipped-w" aria-label="Graphs">
      <a href="/galaxyproject/tools-devteam/graphs" aria-label="Graphs" class="js-selected-navigation-item sunken-menu-item" data-selected-links="repo_graphs repo_contributors /galaxyproject/tools-devteam/graphs">
        <span class="octicon octicon-graph"></span> <span class="full-word">Graphs</span>
        <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
</a>    </li>
  </ul>


</nav>

                <div class="only-with-full-nav">
                    
<div class="js-clone-url clone-url open"
  data-protocol-type="http">
  <h3><span class="text-emphasized">HTTPS</span> clone URL</h3>
  <div class="input-group js-zeroclipboard-container">
    <input type="text" class="input-mini input-monospace js-url-field js-zeroclipboard-target"
           value="https://github.com/galaxyproject/tools-devteam.git" readonly="readonly" aria-label="HTTPS clone URL">
    <span class="input-group-button">
      <button aria-label="Copy to clipboard" class="js-zeroclipboard btn btn-sm zeroclipboard-button tooltipped tooltipped-s" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
    </span>
  </div>
</div>

  
<div class="js-clone-url clone-url "
  data-protocol-type="subversion">
  <h3><span class="text-emphasized">Subversion</span> checkout URL</h3>
  <div class="input-group js-zeroclipboard-container">
    <input type="text" class="input-mini input-monospace js-url-field js-zeroclipboard-target"
           value="https://github.com/galaxyproject/tools-devteam" readonly="readonly" aria-label="Subversion checkout URL">
    <span class="input-group-button">
      <button aria-label="Copy to clipboard" class="js-zeroclipboard btn btn-sm zeroclipboard-button tooltipped tooltipped-s" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
    </span>
  </div>
</div>



  <div class="clone-options">You can clone with
    <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="/users/set_protocol?protocol_selector=http&amp;protocol_type=clone" class="inline-form js-clone-selector-form " data-form-nonce="4ba686ed5228c3eb03400d23254c4d20bc3b66b1" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="JAKVn/If9WDLhdIjJGp0COQLDdP0FtIOOeWxeTPEJa9kkBcLe6/9d193Qtc3fx+s7RDiYfgNqUTPTAhO+q/GIQ==" /></div><button class="btn-link js-clone-selector" data-protocol="http" type="submit">HTTPS</button></form> or <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="/users/set_protocol?protocol_selector=subversion&amp;protocol_type=clone" class="inline-form js-clone-selector-form " data-form-nonce="4ba686ed5228c3eb03400d23254c4d20bc3b66b1" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="&#x2713;" /><input name="authenticity_token" type="hidden" value="9CPqvsue7OFfyvEiEyMH2MniX8cjLMrDNlHlaqhfUwMi6ImJFy/4TLgCYicTu5OMI9QRpIX5wH+ENJIOWoaBow==" /></div><button class="btn-link js-clone-selector" data-protocol="subversion" type="submit">Subversion</button></form>.
    <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you.">
      <span class="octicon octicon-question"></span>
    </a>
  </div>

                  <a href="/galaxyproject/tools-devteam/archive/master.zip"
                     class="btn btn-sm sidebar-button"
                     aria-label="Download the contents of galaxyproject/tools-devteam as a zip file"
                     title="Download the contents of galaxyproject/tools-devteam as a zip file"
                     rel="nofollow">
                    <span class="octicon octicon-cloud-download"></span>
                    Download ZIP
                  </a>
                </div>
          </div>
          <div id="js-repo-pjax-container" class="repository-content context-loader-container" data-pjax-container>

            
  <div class="file-navigation">
    
<div class="select-menu js-menu-container js-select-menu left">
  <span class="btn btn-sm select-menu-button js-menu-target css-truncate" data-hotkey="w"
    data-ref="master"
    title="master"
    role="button" aria-label="Switch branches or tags" tabindex="0" aria-haspopup="true">
    <i>Branch:</i>
    <span class="js-select-button css-truncate-target">master</span>
  </span>

  <div class="select-menu-modal-holder js-menu-content js-navigation-container" data-pjax aria-hidden="true">

    <div class="select-menu-modal">
      <div class="select-menu-header">
        <span class="select-menu-title">Switch branches/tags</span>
        <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span>
      </div>

      <div class="select-menu-filters">
        <div class="select-menu-text-filter">
          <input type="text" aria-label="Filter branches/tags" id="context-commitish-filter-field" class="js-filterable-field js-navigation-enable" placeholder="Filter branches/tags">
        </div>
        <div class="select-menu-tabs">
          <ul>
            <li class="select-menu-tab">
              <a href="#" data-tab-filter="branches" data-filter-placeholder="Filter branches/tags" class="js-select-menu-tab" role="tab">Branches</a>
            </li>
            <li class="select-menu-tab">
              <a href="#" data-tab-filter="tags" data-filter-placeholder="Find a tag…" class="js-select-menu-tab" role="tab">Tags</a>
            </li>
          </ul>
        </div>
      </div>

      <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="branches" role="menu">

        <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">


            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/bamtools/tools/bowtie2/tool-data"
               data-name="bamtools"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="bamtools">
                bamtools
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/blankenberg-dm-samtools-fix-1/tools/bowtie2/tool-data"
               data-name="blankenberg-dm-samtools-fix-1"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="blankenberg-dm-samtools-fix-1">
                blankenberg-dm-samtools-fix-1
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/hisat/tools/bowtie2/tool-data"
               data-name="hisat"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="hisat">
                hisat
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/libgd-export/tools/bowtie2/tool-data"
               data-name="libgd-export"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="libgd-export">
                libgd-export
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open selected"
               href="/galaxyproject/tools-devteam/tree/master/tools/bowtie2/tool-data"
               data-name="master"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="master">
                master
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/origin/hisat/tools/bowtie2/tool-data"
               data-name="origin/hisat"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="origin/hisat">
                origin/hisat
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/osx_compat/tools/bowtie2/tool-data"
               data-name="osx_compat"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="osx_compat">
                osx_compat
              </span>
            </a>
            <a class="select-menu-item js-navigation-item js-navigation-open "
               href="/galaxyproject/tools-devteam/tree/picard_sortsam/tools/bowtie2/tool-data"
               data-name="picard_sortsam"
               data-skip-pjax="true"
               rel="nofollow">
              <span class="select-menu-item-icon octicon octicon-check"></span>
              <span class="select-menu-item-text css-truncate-target" title="picard_sortsam">
                picard_sortsam
              </span>
            </a>
        </div>

          <div class="select-menu-no-results">Nothing to show</div>
      </div>

      <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="tags">
        <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring">


        </div>

        <div class="select-menu-no-results">Nothing to show</div>
      </div>

    </div>
  </div>
</div>

    <div class="btn-group right">
      <a href="/galaxyproject/tools-devteam/find/master" data-pjax data-hotkey="t" class="js-show-file-finder btn btn-sm empty-icon tooltipped tooltipped-s" aria-label="Quickly jump between files">
        <span class="octicon octicon-list-unordered"></span>
      </a>
      <a href="/galaxyproject/tools-devteam/commits/master/tools/bowtie2/tool-data" class="btn btn-sm empty-icon tooltipped tooltipped-s" aria-label="Browse commits for this branch">
        <span class="octicon octicon-history"></span>
      </a>
    </div>
    <div class="breadcrumb">
      <span class="repo-root js-repo-root"><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/galaxyproject/tools-devteam" class="" data-branch="master" data-pjax="true" itemscope="url"><span itemprop="title">tools-devteam</span></a></span></span><span class="separator">/</span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/galaxyproject/tools-devteam/tree/master/tools" class="" data-branch="master" data-pjax="true" itemscope="url"><span itemprop="title">tools</span></a></span><span class="separator">/</span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/galaxyproject/tools-devteam/tree/master/tools/bowtie2" class="" data-branch="master" data-pjax="true" itemscope="url"><span itemprop="title">bowtie2</span></a></span><span class="separator">/</span><strong class="final-path">tool-data</strong><span class="separator">/</span>
    <a class="btn-link disabled tooltipped tooltipped-e" href="#" aria-label="You must be signed in to make or propose changes">
      <span class="octicon octicon-plus"></span>
    </a>

    </div>
  </div>




  <div class="commit commit-tease js-details-container" >
    <p class="commit-title ">
        <a href="/galaxyproject/tools-devteam/commit/0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" class="message" data-pjax="true" title="Imported from capsule None">Imported from capsule None</a>
        
    </p>
    <div class="commit-meta">
      <button aria-label="Copy SHA" class="js-zeroclipboard zeroclipboard-link tooltipped tooltipped-s" data-clipboard-text="0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button>
      <a href="/galaxyproject/tools-devteam/commit/0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" class="sha-block" data-pjax>latest commit <span class="sha">0e90a8ae97</span></a>

      <div class="authorship">
        <img alt="" class="avatar" height="20" src="https://0.gravatar.com/avatar/ad921d60486366258809553a3db49a4a?d=https%3A%2F%2Fassets-cdn.github.com%2Fimages%2Fgravatars%2Fgravatar-user-420.png&amp;r=x&amp;s=140" width="20" />
        <span class="author-name"><span>devteam</span></span>
        authored <time class="updated" datetime="2014-01-27T14:25:15Z" is="relative-time">Jan 27, 2014</time>

      </div>
    </div>
  </div>


<div class="file-wrap">
  <a href="/galaxyproject/tools-devteam/tree/1090680aa5b5320f652f2b8d1ba09012ec64f31b/tools/bowtie2/tool-data" class="hidden js-permalink-shortcut" data-hotkey="y">Permalink</a>

  <table class="files" data-pjax>
      <tr class="up-tree">
        <td></td>
        <td><a href="/galaxyproject/tools-devteam/tree/master/tools/bowtie2" rel="nofollow" title="Go to parent directory">..</a></td>
        <td></td>
        <td></td>
      </tr>


    <tbody>
      <tr class="warning include-fragment-error">
        <td class="icon"><span class="octicon octicon-alert"></span></td>
        <td class="content" colspan="3">Failed to load latest commit information.</td>
      </tr>

        <tr>
          <td class="icon">
            <span class="octicon octicon-file-text"></span>
            <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
          </td>
          <td class="content">
            <span class="css-truncate css-truncate-target"><a href="/galaxyproject/tools-devteam/blob/master/tools/bowtie2/tool-data/bowtie2_indices.loc.sample" class="js-directory-link" id="c40bdb39046837f90eee47b2d4102b4c-df0421721cb0a940077863f2a4c43ce90f15f378" title="bowtie2_indices.loc.sample">bowtie2_indices.loc.sample</a></span>
          </td>
          <td class="message">
            <span class="css-truncate css-truncate-target">
              <a href="/galaxyproject/tools-devteam/commit/0e90a8ae9742dd43fc7d6bbc56c4dbf3b4fc2c7d" class="message" data-pjax="true" title="Imported from capsule None">Imported from capsule None</a>
            </span>
          </td>
          <td class="age">
            <span class="css-truncate css-truncate-target"><time datetime="2014-01-27T14:25:15Z" is="time-ago">Jan 27, 2014</time></span>
          </td>
        </tr>
    </tbody>
  </table>

</div>


  


          </div>
        </div>
        <div class="modal-backdrop"></div>
      </div>
  </div>


    </div><!-- /.wrapper -->

      <div class="container">
  <div class="site-footer" role="contentinfo">
    <ul class="site-footer-links right">
        <li><a href="https://status.github.com/" data-ga-click="Footer, go to status, text:status">Status</a></li>
      <li><a href="https://developer.github.com" data-ga-click="Footer, go to api, text:api">API</a></li>
      <li><a href="https://training.github.com" data-ga-click="Footer, go to training, text:training">Training</a></li>
      <li><a href="https://shop.github.com" data-ga-click="Footer, go to shop, text:shop">Shop</a></li>
        <li><a href="https://github.com/blog" data-ga-click="Footer, go to blog, text:blog">Blog</a></li>
        <li><a href="https://github.com/about" data-ga-click="Footer, go to about, text:about">About</a></li>
        <li><a href="https://help.github.com" data-ga-click="Footer, go to help, text:help">Help</a></li>

    </ul>

    <a href="https://github.com" aria-label="Homepage">
      <span class="mega-octicon octicon-mark-github" title="GitHub"></span>
</a>
    <ul class="site-footer-links">
      <li>&copy; 2015 <span title="0.03530s from github-fe128-cp1-prd.iad.github.net">GitHub</span>, Inc.</li>
        <li><a href="https://github.com/site/terms" data-ga-click="Footer, go to terms, text:terms">Terms</a></li>
        <li><a href="https://github.com/site/privacy" data-ga-click="Footer, go to privacy, text:privacy">Privacy</a></li>
        <li><a href="https://github.com/security" data-ga-click="Footer, go to security, text:security">Security</a></li>
        <li><a href="https://github.com/contact" data-ga-click="Footer, go to contact, text:contact">Contact</a></li>
    </ul>
  </div>
</div>


    <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay">
  <div class="fullscreen-container js-suggester-container">
    <div class="textarea-wrap">
      <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents" placeholder="" aria-label=""></textarea>
      <div class="suggester-container">
        <div class="suggester fullscreen-suggester js-suggester js-navigation-container"></div>
      </div>
    </div>
  </div>
  <div class="fullscreen-sidebar">
    <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode">
      <span class="mega-octicon octicon-screen-normal"></span>
    </a>
    <a href="#" class="theme-switcher js-theme-switcher tooltipped tooltipped-w"
      aria-label="Switch themes">
      <span class="octicon octicon-color-mode"></span>
    </a>
  </div>
</div>



    
    

    <div id="ajax-error-message" class="flash flash-error">
      <span class="octicon octicon-alert"></span>
      <a href="#" class="octicon octicon-x flash-close js-ajax-error-dismiss" aria-label="Dismiss error"></a>
      Something went wrong with that request. Please try again.
    </div>


      <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/frameworks-0485840b01bfad89b36a26560c41c81e89e86a52c7780751cbb38abe578740e3.js"></script>
      <script async="async" crossorigin="anonymous" src="https://assets-cdn.github.com/assets/github/index-0d2574c6492d258b1f72c17ff869c4bfd4599af14b76e035e5799a9009c861c1.js"></script>
      
      
  </body>
</html>