Mercurial > repos > ebi-gxa > scpred_get_std_output
changeset 2:f35b359eece0 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 15:17:59 +0000 |
| parents | 8bd9131f429d |
| children | e7184e62c76c |
| files | scpred_get_std_output.xml scpred_macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/scpred_get_std_output.xml Thu Apr 16 09:29:17 2020 +0000 +++ b/scpred_get_std_output.xml Fri Apr 24 15:17:59 2020 +0000 @@ -5,10 +5,11 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --output-table "${output_table}" + scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" ]]></command> <inputs> <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" /> + <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" /> <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" /> </inputs> <outputs>
--- a/scpred_macros.xml Thu Apr 16 09:29:17 2020 +0000 +++ b/scpred_macros.xml Fri Apr 24 15:17:59 2020 +0000 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scpred-cli</requirement> + <requirement type="package" version="0.0.7">scpred-cli</requirement> <yield/> </requirements> </xml>