# HG changeset patch
# User ebi-gxa
# Date 1587741479 0
# Node ID f35b359eece0de85b51942c25fff210d97cc5d65
# Parent  8bd9131f429dd1c01d6dffbc6a39cac77f5ce20d
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"

diff -r 8bd9131f429d -r f35b359eece0 scpred_get_std_output.xml
--- a/scpred_get_std_output.xml	Thu Apr 16 09:29:17 2020 +0000
+++ b/scpred_get_std_output.xml	Fri Apr 24 15:17:59 2020 +0000
@@ -5,10 +5,11 @@
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[ 
-        scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --output-table "${output_table}" 
+        scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" 
         ]]></command>
     <inputs>
         <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" />
+        <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" />
         <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" />
     </inputs>
     <outputs>
diff -r 8bd9131f429d -r f35b359eece0 scpred_macros.xml
--- a/scpred_macros.xml	Thu Apr 16 09:29:17 2020 +0000
+++ b/scpred_macros.xml	Fri Apr 24 15:17:59 2020 +0000
@@ -4,7 +4,7 @@
     <token name="@PROFILE@">18.01</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="0.0.5">scpred-cli</requirement>
+            <requirement type="package" version="0.0.7">scpred-cli</requirement>
                 <yield/>
         </requirements>
     </xml>