Mercurial > repos > ebi-gxa > scpred_get_feature_space
changeset 2:f16b1ff09f7b draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 15:18:45 +0000 |
| parents | e36121548573 |
| children | dd743734724b |
| files | scpred_get_feature_space.xml scpred_macros.xml |
| diffstat | 2 files changed, 10 insertions(+), 2 deletions(-) [+] |
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--- a/scpred_get_feature_space.xml Thu Apr 16 09:30:07 2020 +0000 +++ b/scpred_get_feature_space.xml Fri Apr 24 15:18:45 2020 +0000 @@ -5,7 +5,15 @@ </macros> <expand macro='requirements' /> <command detect_errors='exit_code'><![CDATA[ - scpred_get_feature_space.R --input-object '${input_object}' --prediction-column '${prediction_column}' --explained-var-limit '${explained_var_limit}' --output-path '${output_obj_path}' --eigenvalue-plot-path '${eigenvalue_plot_path}']]></command> + scpred_get_feature_space.R --input-object '${input_object}' --prediction-column '${prediction_column}' --output-path '${output_obj_path}' + + #if $explained_var_limit + --explained-var-limit '${explained_var_limit}' + #end if + #if $eigenvalue_plot_path + --eigenvalue-plot-path '${eigenvalue_plot_path}' + #end if + ]]></command> <inputs> <param type='data' name='input_object' label='Input SCE object' format='rdata' help='Input SCE object in .rds format' /> <param type='text' name='prediction_column' label='Prediction column' help='Name of the metadata column that contains training labels' />
--- a/scpred_macros.xml Thu Apr 16 09:30:07 2020 +0000 +++ b/scpred_macros.xml Fri Apr 24 15:18:45 2020 +0000 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scpred-cli</requirement> + <requirement type="package" version="0.0.7">scpred-cli</requirement> <yield/> </requirements> </xml>