# HG changeset patch
# User ebi-gxa
# Date 1587741525 0
# Node ID f16b1ff09f7b3d26a074f3e4c3b4c5268e2a3977
# Parent  e361215485736a196574416beff8a1b4ee690bb7
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"

diff -r e36121548573 -r f16b1ff09f7b scpred_get_feature_space.xml
--- a/scpred_get_feature_space.xml	Thu Apr 16 09:30:07 2020 +0000
+++ b/scpred_get_feature_space.xml	Fri Apr 24 15:18:45 2020 +0000
@@ -5,7 +5,15 @@
     </macros>
     <expand macro='requirements' />
     <command detect_errors='exit_code'><![CDATA[
-        scpred_get_feature_space.R  --input-object '${input_object}'  --prediction-column '${prediction_column}' --explained-var-limit '${explained_var_limit}' --output-path '${output_obj_path}' --eigenvalue-plot-path '${eigenvalue_plot_path}']]></command>
+        scpred_get_feature_space.R  --input-object '${input_object}'  --prediction-column '${prediction_column}'  --output-path '${output_obj_path}' 
+
+        #if $explained_var_limit
+        --explained-var-limit '${explained_var_limit}'
+        #end if
+        #if $eigenvalue_plot_path
+        --eigenvalue-plot-path '${eigenvalue_plot_path}'
+        #end if
+        ]]></command>
     <inputs>
         <param type='data' name='input_object' label='Input SCE object' format='rdata' help='Input SCE object in .rds format' />
         <param type='text' name='prediction_column' label='Prediction column' help='Name of the metadata column that contains training labels' />
diff -r e36121548573 -r f16b1ff09f7b scpred_macros.xml
--- a/scpred_macros.xml	Thu Apr 16 09:30:07 2020 +0000
+++ b/scpred_macros.xml	Fri Apr 24 15:18:45 2020 +0000
@@ -4,7 +4,7 @@
     <token name="@PROFILE@">18.01</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="0.0.5">scpred-cli</requirement>
+            <requirement type="package" version="0.0.7">scpred-cli</requirement>
                 <yield/>
         </requirements>
     </xml>