Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

changeset 13:355940295e76 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit e27d18d58ae095e7fad4b08b04370857a1d37964-dirty
author mvdbeek
date Tue, 02 Feb 2016 15:04:45 -0500
parents 2fc0d4756048
children f3e338e433ef
files readmap.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/readmap.xml	Tue Feb 02 14:53:10 2016 -0500
+++ b/readmap.xml	Tue Feb 02 15:04:45 2016 -0500
@@ -201,8 +201,8 @@
         start=i
         end=i+rows_per_page/2-1
         if (end>n_genes) {end=n_genes}
-        if ("${yrange}" != 0) {readmap_plot.list=lapply(per_gene_readmap[start:end], function(x) plot_readmap(x, par.settings=par.settings.readmap)) } else {
-        readmap_plot.list=lapply(per_gene_readmap[start:end], function(x) plot_readmap(x, ylim=c(-"{$yrange}", "{$yrange}"), par.settings=par.settings.readmap)) }
+        if (${yrange} != 0) {readmap_plot.list=lapply(per_gene_readmap[start:end], function(x) plot_readmap(x, par.settings=par.settings.readmap)) } else {
+        readmap_plot.list=lapply(per_gene_readmap[start:end], function(x) plot_readmap(x, ylim=c(-${yrange}, ${yrange}), par.settings=par.settings.readmap)) }
         size_plot.list=lapply(per_gene_size[start:end], function(x) plot_size_distribution(x, strip=FALSE, par.settings=par.settings.combination.size))
 	plot.list=rbind(read_plot.list, size_plot.list )
         args.list=c(plot.list, list(nrow=rows_per_page + extrarow, ncol=1,