Mercurial > repos > drosofff > msp_sr_bowtie
changeset 22:764181d43c36 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 1793456e6d76453825d92c76ca1051f6eccde0ab
| author | drosofff |
|---|---|
| date | Tue, 27 Jun 2017 04:33:53 -0400 |
| parents | f752a90d266f |
| children | 411b6453b5d0 |
| files | sRbowtie.xml |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/sRbowtie.xml Tue Jun 27 04:21:44 2017 -0400 +++ b/sRbowtie.xml Tue Jun 27 04:33:53 2017 -0400 @@ -18,17 +18,17 @@ ## set the method_prefix #if $method == "RNA": - #set method_prefix = "-v %s -M 1 --best --strata --norc" % (str($v_mismatches)) + #set method_prefix = "-v %s -M 1 --best --strata --norc" % str($v_mismatches) #elif $method == "unique": - #set method_prefix = "-v %s -m 1" % (str($v_mismatches)) + #set method_prefix = "-v %s -m 1" % str($v_mismatches) #elif $method == "multiple": - #set method_prefix = "-v %s -M 1 --best --strata" % (str($v_mismatches)) + #set method_prefix = "-v %s -M 1 --best --strata" % str($v_mismatches) #elif $method == "k_option": - #set method_prefix = "-v %s -k 1 --best" % (str($v_mismatches)) + #set method_prefix = "-v %s -k 1 --best" % str($v_mismatches) #elif $method == "n_option": - #set method_prefix = "-n %s -M 1 --best" % (str($v_mismatches)) + #set method_prefix = "-n %s -M 1 --best" % str($v_mismatches) #elif $method == "a_option": - #set method_prefix = "-v %s -a --best" % (str($v_mismatches)) + #set method_prefix = "-v %s -a --best" % str($v_mismatches) #end if ## set the extra_output