# HG changeset patch
# User drosofff
# Date 1498552433 14400
# Node ID 764181d43c363dfc492abe79e02acac3a7166700
# Parent  f752a90d266f2e501ce94d4c7d36277c903e1fc5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 1793456e6d76453825d92c76ca1051f6eccde0ab

diff -r f752a90d266f -r 764181d43c36 sRbowtie.xml
--- a/sRbowtie.xml	Tue Jun 27 04:21:44 2017 -0400
+++ b/sRbowtie.xml	Tue Jun 27 04:33:53 2017 -0400
@@ -18,17 +18,17 @@
 
         ## set the method_prefix
         #if $method == "RNA":
-            #set method_prefix = "-v %s -M 1 --best --strata --norc" % (str($v_mismatches))
+            #set method_prefix = "-v %s -M 1 --best --strata --norc" % str($v_mismatches)
         #elif $method == "unique":
-            #set method_prefix = "-v %s -m 1" % (str($v_mismatches))
+            #set method_prefix = "-v %s -m 1" % str($v_mismatches)
         #elif $method == "multiple":
-            #set method_prefix = "-v %s -M 1 --best --strata" % (str($v_mismatches))
+            #set method_prefix = "-v %s -M 1 --best --strata" % str($v_mismatches)
         #elif $method == "k_option":
-            #set method_prefix = "-v %s -k 1 --best" % (str($v_mismatches))
+            #set method_prefix = "-v %s -k 1 --best" % str($v_mismatches)
         #elif $method == "n_option":
-            #set method_prefix = "-n %s -M 1 --best" % (str($v_mismatches))
+            #set method_prefix = "-n %s -M 1 --best" % str($v_mismatches)
         #elif $method == "a_option":
-            #set method_prefix = "-v %s -a --best" % (str($v_mismatches))
+            #set method_prefix = "-v %s -a --best" % str($v_mismatches)
         #end if
  
         ## set the extra_output