Mercurial > repos > drosofff > msp_sr_bowtie
changeset 2:316124e85b8d draft
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
| author | mvdbeek |
|---|---|
| date | Mon, 25 May 2015 12:44:36 -0400 |
| parents | b50d7228b678 |
| children | c9c931695e72 |
| files | sRbowtie.py sRbowtie.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/sRbowtie.py Sun Mar 29 10:25:36 2015 -0400 +++ b/sRbowtie.py Mon May 25 12:44:36 2015 -0400 @@ -52,7 +52,7 @@ index="path", output="path", pslots="4"): if input_format == "fasta": input_format = "-f" - elif input_format == "fastq": + elif (input_format == "fastq") or (input_format == "fastqsanger"): input_format = "-q" else: raise Exception('input format must be one of fasta or fastq')
--- a/sRbowtie.xml Sun Mar 29 10:25:36 2015 -0400 +++ b/sRbowtie.xml Mon May 25 12:44:36 2015 -0400 @@ -44,7 +44,7 @@ <option value="history">Use one from the history</option> </param> <when value="indexed"> - <param help="if your genome of interest is not listed - contact GED team" label="Select a DNA reference index" name="index" type="select"> + <param help="if your genome of interest is not listed - contact instance administrator" label="Select a DNA reference index" name="index" type="select"> <options from_data_table="bowtie_indexes"> </options>