Mercurial > repos > drosofff > msp_cap3

changeset 6:e29f3d1124e4 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_cap3 commit 6e17dab36fc81430141c77506a94f5db4935c1b8
author drosofff
date Wed, 28 Oct 2015 13:21:15 -0400
parents dd02d02ca305
children 858e4f25ec2d
files cap3.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cap3.xml	Wed Oct 28 13:11:29 2015 -0400
+++ b/cap3.xml	Wed Oct 28 13:21:15 2015 -0400
@@ -4,7 +4,7 @@
     	<requirement type="package" version="3">cap3</requirement>
     </requirements>
 <command>
-cap3 -o $overlaplength -p overlapidentity "$inputSequences" > "$cap3stdout";
+cap3 "$inputSequences" -o $overlaplength -p overlapidentity > "$cap3stdout";
                 mv "$inputSequences".cap.contigs $contigs;
                 mv "$inputSequences".cap.contigs.qual $contigsqual;
                 mv "$inputSequences".cap.contigs.links $contigslink;