# HG changeset patch
# User drosofff
# Date 1446052875 14400
# Node ID e29f3d1124e40f10d49370dc6c7a8369db2c563d
# Parent  dd02d02ca30575b7ead54a433e88bf74bc990ad1
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_cap3 commit 6e17dab36fc81430141c77506a94f5db4935c1b8

diff -r dd02d02ca305 -r e29f3d1124e4 cap3.xml
--- a/cap3.xml	Wed Oct 28 13:11:29 2015 -0400
+++ b/cap3.xml	Wed Oct 28 13:21:15 2015 -0400
@@ -4,7 +4,7 @@
     	<requirement type="package" version="3">cap3</requirement>
     </requirements>
 <command>
-cap3 -o $overlaplength -p overlapidentity "$inputSequences" > "$cap3stdout";
+cap3 "$inputSequences" -o $overlaplength -p overlapidentity > "$cap3stdout";
                 mv "$inputSequences".cap.contigs $contigs;
                 mv "$inputSequences".cap.contigs.qual $contigsqual;
                 mv "$inputSequences".cap.contigs.links $contigslink;