Mercurial > repos > drosofff > msp_cap3

changeset 3:83716d69ef81 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sat, 20 Jun 2015 05:55:37 -0400
parents d33e0baca778
children 4cf7201615f5
files cap3.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cap3.xml	Sat Jun 20 05:46:07 2015 -0400
+++ b/cap3.xml	Sat Jun 20 05:55:37 2015 -0400
@@ -5,13 +5,13 @@
     </requirements>
 <command>
 cap3 "$inputSequences" > "$cap3stdout";
-                cat "$inputSequences".cap.contigs "$inputSequences".cap.singlets > $contigsandsinglets
                 mv "$inputSequences".cap.contigs $contigs;
                 mv "$inputSequences".cap.contigs.qual $contigsqual;
                 mv "$inputSequences".cap.contigs.links $contigslink;
                 mv "$inputSequences".cap.ace $ace;
                 mv "$inputSequences".cap.info $info;
                 mv "$inputSequences".cap.singlets $singlets;
+                cat $contigs $singlets > $contigsandsinglets
 
 </command>