# HG changeset patch
# User drosofff
# Date 1434794137 14400
# Node ID 83716d69ef810b822a9c5d9aa6e8ff5d1d475ede
# Parent  d33e0baca778b22972150dcbe0c98c056307bd2e
planemo upload for repository https://bitbucket.org/drosofff/gedtools/

diff -r d33e0baca778 -r 83716d69ef81 cap3.xml
--- a/cap3.xml	Sat Jun 20 05:46:07 2015 -0400
+++ b/cap3.xml	Sat Jun 20 05:55:37 2015 -0400
@@ -5,13 +5,13 @@
     </requirements>
 <command>
 cap3 "$inputSequences" > "$cap3stdout";
-                cat "$inputSequences".cap.contigs "$inputSequences".cap.singlets > $contigsandsinglets
                 mv "$inputSequences".cap.contigs $contigs;
                 mv "$inputSequences".cap.contigs.qual $contigsqual;
                 mv "$inputSequences".cap.contigs.links $contigslink;
                 mv "$inputSequences".cap.ace $ace;
                 mv "$inputSequences".cap.info $info;
                 mv "$inputSequences".cap.singlets $singlets;
+                cat $contigs $singlets > $contigsandsinglets
 
 </command>