Mercurial > repos > diodupima > coast_search_blast
changeset 8:d0a7d282b1b9 draft
"planemo upload commit 8f9b7580dc80c99bc735ea899819ff1d109de311-dirty"
author | diodupima |
---|---|
date | Thu, 15 Jul 2021 11:51:11 +0000 |
parents | 846be85dc0d0 |
children | d35be2be341f |
files | coast_search_blast.xml |
diffstat | 1 files changed, 0 insertions(+), 57 deletions(-) [+] |
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--- a/coast_search_blast.xml Thu Jul 15 11:43:46 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,57 +0,0 @@ -<tool id="coast_search_blast" name="COAST - Search with BLAST" version="0.1.2"> - <description>Run a new job, and identify the closest proteomes, using BLAST</description> - <macros> - <import>macros.xml</import> - </macros> - <requirements> - <expand macro="requirements"/> - </requirements> - <command ><![CDATA[ - coast - @QUERY@ - @DB@ - --engine blast - --inplace_workspace - @AAI_FILTER@ - @OUTPUT@ - @QUERY_KEYWORDS@ - @OUTPUT_FORMAT@ - @BLAST_TAX_FILTER@ - @BLAST_ALN_OPTIONS@ - @GENERIC_ALN_OPTIONS@ - ]]></command> - <inputs> - <expand macro="input_query" /> - <expand macro="protein_db" /> - <expand macro="blast_taxon_filter"/> - <expand macro="output_format"/> - <expand macro="aai_filter"/> - <section name="aln_adv" title="Advanced Alignment Settings" > - <expand macro="blast_aln_options"/> - <expand macro="generic_aln_options"/> - </section> - </inputs> - <outputs> - <expand macro="results_alignment"/> - <expand macro="results_report"/> - </outputs> - <tests> - </tests> - <help> - -@TIME_WARNING@ - -COAST Search with BLASTp -======================== - -@GENERAL_DESC@ -@AAI_DESC@ -@TAX_FILTER_WARNING@ -@OUT_DESC@ - - </help> - <citations> - <expand macro="citations_coast"/> - <expand macro="citations_blast"/> - </citations> -</tool> \ No newline at end of file