# HG changeset patch
# User diodupima
# Date 1626349871 0
# Node ID d0a7d282b1b9d07f29f83d81b0ba810b60009718
# Parent  846be85dc0d0ff84f4e776b76296e9aa39f26bfe
"planemo upload commit 8f9b7580dc80c99bc735ea899819ff1d109de311-dirty"

diff -r 846be85dc0d0 -r d0a7d282b1b9 coast_search_blast.xml
--- a/coast_search_blast.xml	Thu Jul 15 11:43:46 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,57 +0,0 @@
-<tool id="coast_search_blast" name="COAST - Search with BLAST" version="0.1.2">
-    <description>Run a new job, and identify the closest proteomes, using BLAST</description>
-    <macros>
-        <import>macros.xml</import>
-    </macros>
-    <requirements>
-        <expand macro="requirements"/>
-    </requirements>
-    <command ><![CDATA[
-        coast
-        @QUERY@
-        @DB@
-        --engine blast
-        --inplace_workspace
-        @AAI_FILTER@
-        @OUTPUT@
-        @QUERY_KEYWORDS@
-        @OUTPUT_FORMAT@
-        @BLAST_TAX_FILTER@
-        @BLAST_ALN_OPTIONS@
-        @GENERIC_ALN_OPTIONS@
-    ]]></command>
-    <inputs>
-        <expand macro="input_query" />
-        <expand macro="protein_db" />
-        <expand macro="blast_taxon_filter"/>
-        <expand macro="output_format"/>
-        <expand macro="aai_filter"/>
-        <section name="aln_adv" title="Advanced Alignment Settings" >
-            <expand macro="blast_aln_options"/>
-            <expand macro="generic_aln_options"/>
-        </section>
-    </inputs>
-    <outputs>
-        <expand macro="results_alignment"/>
-        <expand macro="results_report"/>
-    </outputs>
-    <tests>
-    </tests>
-    <help>
-
-@TIME_WARNING@
-
-COAST Search with BLASTp
-========================
-
-@GENERAL_DESC@
-@AAI_DESC@
-@TAX_FILTER_WARNING@
-@OUT_DESC@
-
-    </help>
-    <citations>
-        <expand macro="citations_coast"/>
-        <expand macro="citations_blast"/>
-    </citations>
-</tool>
\ No newline at end of file