Mercurial > repos > dfornika > data_manager_build_mob_suite_database
changeset 21:b37cf95d8b3b draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mob_suite_database/ commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty
| author | dfornika |
|---|---|
| date | Mon, 24 Jun 2019 19:41:51 -0400 |
| parents | 4955ab76ccf8 |
| children | a7119b575009 |
| files | data_manager/mob_suite_build_database.py data_manager/mob_suite_build_database.xml |
| diffstat | 2 files changed, 8 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/data_manager/mob_suite_build_database.py Mon Jun 24 15:15:21 2019 -0400 +++ b/data_manager/mob_suite_build_database.py Mon Jun 24 19:41:51 2019 -0400 @@ -60,13 +60,19 @@ subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list, cwd=target_directory) + bagit_args_list = [ + database_path, + ] + + subprocess.check_call(['bagit.py'] + bagit_args_list, cwd=target_directory) + data_table_entry = { "data_tables": { data_table_name: [ { "value": database_value, "name": database_name, - "path": database_path, + "path": os.path.join(database_path, 'data') } ] }
--- a/data_manager/mob_suite_build_database.xml Mon Jun 24 15:15:21 2019 -0400 +++ b/data_manager/mob_suite_build_database.xml Mon Jun 24 19:41:51 2019 -0400 @@ -5,6 +5,7 @@ <requirement type="package" version="1.4.9.1">mob_suite</requirement> <requirement type="package" version="2.3.0">blast</requirement> <requirement type="package" version="2.1.1">mash</requirement> + <requirement type="package" version="1.7.0">bagit</requirement> </requirements> <version_command>echo '1.4.9.1'</version_command> <command detect_errors="exit_code">