# HG changeset patch # User dfornika # Date 1561419711 14400 # Node ID b37cf95d8b3ba8f8cc068dad7d8cf737f45f85f1 # Parent 4955ab76ccf8391caf1fc861b4117f70f5ddd3cc planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mob_suite_database/ commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty diff -r 4955ab76ccf8 -r b37cf95d8b3b data_manager/mob_suite_build_database.py --- a/data_manager/mob_suite_build_database.py Mon Jun 24 15:15:21 2019 -0400 +++ b/data_manager/mob_suite_build_database.py Mon Jun 24 19:41:51 2019 -0400 @@ -60,13 +60,19 @@ subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list, cwd=target_directory) + bagit_args_list = [ + database_path, + ] + + subprocess.check_call(['bagit.py'] + bagit_args_list, cwd=target_directory) + data_table_entry = { "data_tables": { data_table_name: [ { "value": database_value, "name": database_name, - "path": database_path, + "path": os.path.join(database_path, 'data') } ] } diff -r 4955ab76ccf8 -r b37cf95d8b3b data_manager/mob_suite_build_database.xml --- a/data_manager/mob_suite_build_database.xml Mon Jun 24 15:15:21 2019 -0400 +++ b/data_manager/mob_suite_build_database.xml Mon Jun 24 19:41:51 2019 -0400 @@ -5,6 +5,7 @@ mob_suite blast mash + bagit echo '1.4.9.1'