Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 50:df30afab73fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 558493454e620f1d7c628fd604de1f46c1b50ebc-dirty
author dfornika
date Fri, 03 May 2019 18:52:15 -0400
parents 2180fe4e7dba
children 2fd3ebc4fcf3
files data_manager/kraken2_build_database.xml
diffstat 1 files changed, 6 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.xml	Fri May 03 18:48:04 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Fri May 03 18:52:15 2019 -0400
@@ -24,6 +24,12 @@
             --kmer-len ${database_type.kmer_len}
             --minimizer-len ${database_type.minimizer_len}
             --minimizer-spaces ${database_type.minimizer_spaces}
+          #else if $database_type.database_type == "special"
+            --threads \${GALAXY_SLOTS:-1}
+            --special-database-type ${database_type.special_database_type}
+            --kmer-len ${database_type.kmer_len}
+            --minimizer-len ${database_type.minimizer_len}
+            --minimizer-spaces ${database_type.minimizer_spaces}
           #end if
     ]]>
     </command>